MpTheory Java 库：一个基于代谢物 P 理论的多平台系统生物学的 Java 库。
MpTheory Java library: a multi-platform Java library for systems biology based on the Metabolic P theory.
机构信息
Department of Computer Science, University of Verona, 37134 Verona, Italy, Center for BioMedical Computing, University of Verona, 37134 Verona, Italy and The Microsoft Research - University of Trento, Centre for Computational and Systems Biology (COSBI), 38068 Rovereto (TN), Italy Department of Computer Science, University of Verona, 37134 Verona, Italy, Center for BioMedical Computing, University of Verona, 37134 Verona, Italy and The Microsoft Research - University of Trento, Centre for Computational and Systems Biology (COSBI), 38068 Rovereto (TN), Italy Department of Computer Science, University of Verona, 37134 Verona, Italy, Center for BioMedical Computing, University of Verona, 37134 Verona, Italy and The Microsoft Research - University of Trento, Centre for Computational and Systems Biology (COSBI), 38068 Rovereto (TN), Italy Department of Computer Science, University of Verona, 37134 Verona, Italy, Center for BioMedical Computing, University of Verona, 37134 Verona, Italy and The Microsoft Research - University of Trento, Centre for Computational and Systems Biology (COSBI), 38068 Rovereto (TN), Italy.
Department of Computer Science, University of Verona, 37134 Verona, Italy, Center for BioMedical Computing, University of Verona, 37134 Verona, Italy and The Microsoft Research - University of Trento, Centre for Computational and Systems Biology (COSBI), 38068 Rovereto (TN), Italy Department of Computer Science, University of Verona, 37134 Verona, Italy, Center for BioMedical Computing, University of Verona, 37134 Verona, Italy and The Microsoft Research - University of Trento, Centre for Computational and Systems Biology (COSBI), 38068 Rovereto (TN), Italy.
出版信息
Bioinformatics. 2015 Apr 15;31(8):1328-30. doi: 10.1093/bioinformatics/btu814. Epub 2014 Dec 10.
UNLABELLED
MpTheory Java library is an open-source project collecting a set of objects and algorithms for modeling observed dynamics by means of the Metabolic P (MP) theory, that is, a mathematical theory introduced in 2004 for modeling biological dynamics. By means of the library, it is possible to model biological systems both at continuous and at discrete time. Moreover, the library comprises a set of regression algorithms for inferring MP models starting from time series of observations. To enhance the modeling experience, beside a pure Java usage, the library can be directly used within the most popular computing environments, such as MATLAB, GNU Octave, Mathematica and R.
AVAILABILITY AND IMPLEMENTATION
The library is open-source and licensed under the GNU Lesser General Public License (LGPL) Version 3.0. Source code, binaries and complete documentation are available at http://mptheory.scienze.univr.it.
CONTACT
luca.marchetti@univr.it, marchetti@cosbi.eu
SUPPLEMENTARY INFORMATION
Supplementary data are available at Bioinformatics online.
未标记
MpTheory Java 库是一个开源项目，它收集了一组对象和算法，用于通过代谢途径 (MP) 理论来模拟观察到的动态，即 2004 年引入的用于模拟生物动态的数学理论。通过该库，可以在连续和离散时间上对生物系统进行建模。此外，该库还包含一组回归算法，可用于从观察时间序列中推断 MP 模型。为了增强建模体验，除了纯 Java 使用外，该库还可以直接在最流行的计算环境中使用，例如 MATLAB、GNU Octave、Mathematica 和 R。
可用性和实现
该库是开源的，并根据 GNU Lesser General Public License (LGPL) 版本 3.0 获得许可。源代码、二进制文件和完整文档可在 http://mptheory.scienze.univr.it 上获得。
联系人
luca.marchetti@univr.it，marchetti@cosbi.eu
补充信息
补充数据可在 Bioinformatics 在线获得。
Zotero 插件