Tsai Ya-Ping, Chen Hsiao-Fan, Chen Sung-Yuan, Cheng Wei-Chung, Wang Hsei-Wei, Shen Zih-Jie, Song Chunxiao, Teng Shu-Chun, He Chuan, Wu Kou-Juey
Genome Biol. 2014 Dec 3;15(12):513. doi: 10.1186/s13059-014-0513-0.
Hypoxia induces the epithelial-mesenchymal transition, EMT, to promote cancer metastasis. In addition to transcriptional regulation mediated by hypoxia-inducible factors, HIFs, other epigenetic mechanisms of gene regulation, such as histone modifications and DNA methylation, are utilized under hypoxia. However, whether DNA demethylation mediated by TET1, a DNA dioxygenase converting 5-methylcytosine, 5mC, into 5-hydroxymethylcytosine, 5hmC, plays a role in hypoxia-induced EMT is largely unknown.
We show that TET1 regulates hypoxia-responsive gene expression. Hypoxia/HIF-2α regulates the expression of TET1. Knockdown of TET1 mitigates hypoxia-induced EMT. RNA sequencing and 5hmC sequencing identified the set of TET1-regulated genes. Cholesterol metabolic process genes are among the genes that showed high prevalence and statistical significance. We characterize one of the genes, INSIG1 (insulin induced gene 1), to confirm its expression and the 5hmC levels in its promoter. Knockdown of INSIG1 also mitigates hypoxia-induced EMT. Finally, TET1 is shown to be a transcriptional co-activator that interacts with HIF-1α and HIF-2α to enhance their transactivation activity independent of its enzymatic activity. TET1 acts as a co-activator to further enhance the expression of INSIG1 together with HIF-2α. We define the domain in HIF-1α that interacts with TET1 and map the domain in TET1 that confers transactivation to a 200 amino acid region that contains a CXXC domain. The TET1 catalytically inactive mutant is capable of rescuing hypoxia-induced EMT in TET1 knockdown cells.
These findings demonstrate that TET1 serves as a transcription co-activator to regulate hypoxia-responsive gene expression and EMT, in addition to its role in demethylating 5mC.
缺氧诱导上皮-间质转化(EMT)以促进癌症转移。除了由缺氧诱导因子(HIFs)介导的转录调控外,在缺氧条件下还利用了其他基因调控的表观遗传机制,如组蛋白修饰和DNA甲基化。然而,由TET1介导的DNA去甲基化是否在缺氧诱导的EMT中起作用,TET1是一种将5-甲基胞嘧啶(5mC)转化为5-羟甲基胞嘧啶(5hmC)的DNA双加氧酶,目前尚不清楚。
我们发现TET1调节缺氧反应基因的表达。缺氧/HIF-2α调节TET1的表达。敲低TET1可减轻缺氧诱导的EMT。RNA测序和5hmC测序确定了TET1调控的基因集。胆固醇代谢过程基因是具有高发生率和统计学意义的基因之一。我们对其中一个基因INSIG1(胰岛素诱导基因1)进行了表征,以确认其表达及其启动子中的5hmC水平。敲低INSIG1也可减轻缺氧诱导的EMT。最后,TET1被证明是一种转录共激活因子,它与HIF-1α和HIF-2α相互作用,以增强它们的反式激活活性,而不依赖于其酶活性。TET1作为共激活因子,与HIF-2α一起进一步增强INSIG1的表达。我们确定了HIF-1α中与TET1相互作用的结构域,并将TET1中赋予反式激活作用的结构域定位到一个包含CXXC结构域的200个氨基酸区域。TET1催化无活性突变体能够挽救TET1敲低细胞中缺氧诱导的EMT。
这些发现表明,TET1除了在5mC去甲基化中的作用外,还作为转录共激活因子调节缺氧反应基因的表达和EMT。