Arlt Janine, Homeyer André, Sänger Constanze, Dahmen Uta, Dirsch Olaf
*Department of General, Visceral and Vascular Surgery, Experimental Transplantation Surgery, Jena University Hospital, Jena †Fraunhofer Institute for Medical Image Computing MEVIS, Bremen ‡Institute of Pathology, Chemnitz Hospital, Chemnitz, Germany.
Appl Immunohistochem Mol Morphol. 2016 Jan;24(1):1-10. doi: 10.1097/PAI.0000000000000120.
Quantitative analysis of histologic slides is of importance for pathology and also to address surgical questions. Recently, a novel application was developed for the automated quantification of whole-slide images. The aim of this study was to test and validate the underlying image analysis algorithm with respect to user friendliness, accuracy, and transferability to different histologic scenarios. The algorithm splits the images into tiles of a predetermined size and identifies the tissue class of each tile. In the training procedure, the user specifies example tiles of the different tissue classes. In the subsequent analysis procedure, the algorithm classifies each tile into the previously specified classes. User friendliness was evaluated by recording training time and testing reproducibility of the training procedure of users with different background. Accuracy was determined with respect to single and batch analysis. Transferability was demonstrated by analyzing tissue of different organs (rat liver, kidney, small bowel, and spleen) and with different stainings (glutamine synthetase and hematoxylin-eosin). Users of different educational background could apply the program efficiently after a short introduction. When analyzing images with similar properties, accuracy of >90% was reached in single images as well as in batch mode. We demonstrated that the novel application is user friendly and very accurate. With the "training" procedure the application can be adapted to novel image characteristics simply by giving examples of relevant tissue structures. Therefore, it is suitable for the fast and efficient analysis of high numbers of fully digitalized histologic sections, potentially allowing "high-throughput" quantitative "histomic" analysis.
组织学切片的定量分析对于病理学很重要,对解决外科问题也很重要。最近,开发了一种用于自动定量全切片图像的新应用程序。本研究的目的是在用户友好性、准确性以及对不同组织学场景的可转移性方面测试和验证基础图像分析算法。该算法将图像分割成预定大小的切片,并识别每个切片的组织类别。在训练过程中,用户指定不同组织类别的示例切片。在随后的分析过程中,算法将每个切片分类到先前指定的类别中。通过记录训练时间和测试不同背景用户训练过程的可重复性来评估用户友好性。根据单张分析和批量分析确定准确性。通过分析不同器官(大鼠肝脏、肾脏、小肠和脾脏)的组织以及不同染色(谷氨酰胺合成酶和苏木精 - 伊红)来证明可转移性。不同教育背景的用户在简短介绍后就能有效地应用该程序。在分析具有相似特性的图像时,单张图像以及批量模式下的准确率均达到90%以上。我们证明了这种新应用程序用户友好且非常准确。通过“训练”程序,只需给出相关组织结构的示例,该应用程序就能适应新的图像特征。因此,它适用于快速高效地分析大量全数字化组织学切片,有可能实现“高通量”定量“组织组学”分析。