产紫菌素海洋细菌假交替单胞菌属520P1的基因组序列草图
Draft Genome Sequence of Violacein-Producing Marine Bacterium Pseudoalteromonas sp. 520P1.
作者信息
Dang Hoang Tran, Yotsumoto Kentarou, Enomoto Keiichi
机构信息
School of Environmental Science and Engineering, Kochi University of Technology, Kochi, Japan.
School of Environmental Science and Engineering, Kochi University of Technology, Kochi, Japan
出版信息
Genome Announc. 2014 Dec 24;2(6):e01346-14. doi: 10.1128/genomeA.01346-14.
Abstract
Here, we report a draft 5.25-Mb genome sequence of Pseudoalteromonas sp. 520P1, a marine violacein-producing bacterium isolated from the Pacific coast of Japan. Genome annotation by BLAST searches revealed the presence of one acylhomoserine lactone (AHL) synthase (luxI) and five AHL receptor protein (luxR) gene homologs.
摘要
在此，我们报道了从日本太平洋海岸分离出的一株产紫菌素的海洋细菌——假交替单胞菌520P1的5.25兆碱基基因组序列草图。通过BLAST搜索进行的基因组注释显示存在一个酰基高丝氨酸内酯（AHL）合酶（luxI）和五个AHL受体蛋白（luxR）基因同源物。
相似文献
1
Draft Genome Sequence of Violacein-Producing Marine Bacterium Pseudoalteromonas sp. 520P1.产紫菌素海洋细菌假交替单胞菌属520P1的基因组序列草图
Genome Announc. 2014 Dec 24;2(6):e01346-14. doi: 10.1128/genomeA.01346-14.
2
Characterization of LuxI and LuxR Protein Homologs of N-Acylhomoserine Lactone-Dependent Quorum Sensing System in Pseudoalteromonas sp. 520P1.假交替单胞菌520P1中N-酰基高丝氨酸内酯依赖性群体感应系统的LuxI和LuxR蛋白同源物的表征
Mar Biotechnol (NY). 2017 Feb;19(1):1-10. doi: 10.1007/s10126-016-9726-4. Epub 2017 Jan 12.
3
Characterization of a gene cluster and its putative promoter region for violacein biosynthesis in Pseudoalteromonas sp. 520P1.对假交替单胞菌 520P1 中类黑囊菌素生物合成的基因簇及其假定启动子区的特征描述。
Appl Microbiol Biotechnol. 2011 Jun;90(6):1963-71. doi: 10.1007/s00253-011-3203-9. Epub 2011 Apr 7.
4
Whole genome sequencing and analysis reveal insights into the genetic structure, diversity and evolutionary relatedness of luxI and luxR homologs in bacteria belonging to the Sphingomonadaceae family.全基因组测序与分析揭示了鞘脂单胞菌科细菌中luxI和luxR同源物的遗传结构、多样性及进化相关性。
Front Cell Infect Microbiol. 2015 Jan 8;4:188. doi: 10.3389/fcimb.2014.00188. eCollection 2014.
5
Unravelling the genome of long chain N-acylhomoserine lactone-producing Acinetobacter sp. strain GG2 and identification of its quorum sensing synthase gene.解析产长链N-酰基高丝氨酸内酯的不动杆菌属菌株GG2的基因组并鉴定其群体感应合成酶基因。
Front Microbiol. 2015 Apr 14;6:240. doi: 10.3389/fmicb.2015.00240. eCollection 2015.
6
An evolving perspective on the Pseudomonas aeruginosa orphan quorum sensing regulator QscR.对铜绿假单胞菌孤儿群体感应调节因子QscR的一种不断演变的观点。
Front Cell Infect Microbiol. 2014 Oct 28;4:152. doi: 10.3389/fcimb.2014.00152. eCollection 2014.
7
Quorum sensing signaling molecules involved in the production of violacein by Pseudoalteromonas.与假交替单胞菌产生紫菌素相关的群体感应信号分子。
Biosci Biotechnol Biochem. 2008 Jul;72(7):1958-61. doi: 10.1271/bbb.80090. Epub 2008 Jul 7.
8
Draft genome sequence of Citrobacter freundii strain ST2, a γ-proteobacterium that produces N-acylhomoserine lactones.弗氏柠檬酸杆菌ST2菌株的基因组序列草图，ST2是一种能产生N-酰基高丝氨酸内酯的γ-变形菌。
Genom Data. 2015 Oct 8;6:234-6. doi: 10.1016/j.gdata.2015.10.003. eCollection 2015 Dec.
9
Modulation of violacein production and phenotypes associated with biofilm by exogenous quorum sensing N-acylhomoserine lactones in the marine bacterium Pseudoalteromonas ulvae TC14.外源群体感应N-酰基高丝氨酸内酯对海洋细菌解淀粉假交替单胞菌TC14中紫菌素产生及与生物膜相关表型的调控
Microbiology (Reading). 2015 Oct;161(10):2039-2051. doi: 10.1099/mic.0.000147. Epub 2015 Aug 28.
10
Genome sequencing-assisted identification and the first functional validation of N-acyl-homoserine-lactone synthases from the Sphingomonadaceae family.基于基因组测序的鞘脂单胞菌科N-酰基高丝氨酸内酯合酶的鉴定及首次功能验证
PeerJ. 2016 Aug 30;4:e2332. doi: 10.7717/peerj.2332. eCollection 2016.
引用本文的文献
1
Multi-target drug with potential applications: violacein in the spotlight.具有潜在应用价值的多靶点药物：聚酮类紫色杆菌素备受关注。
World J Microbiol Biotechnol. 2021 Aug 16;37(9):151. doi: 10.1007/s11274-021-03120-4.
2
An Overview on Industrial and Medical Applications of Bio-Pigments Synthesized by Marine Bacteria.海洋细菌合成的生物色素在工业和医学应用方面的概述
Microorganisms. 2020 Dec 22;9(1):11. doi: 10.3390/microorganisms9010011.
3
Characterization of LuxI and LuxR Protein Homologs of N-Acylhomoserine Lactone-Dependent Quorum Sensing System in Pseudoalteromonas sp. 520P1.假交替单胞菌520P1中N-酰基高丝氨酸内酯依赖性群体感应系统的LuxI和LuxR蛋白同源物的表征
Mar Biotechnol (NY). 2017 Feb;19(1):1-10. doi: 10.1007/s10126-016-9726-4. Epub 2017 Jan 12.
本文引用的文献
1
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).SEED 与利用子系统技术进行快速微生物基因组注释（RAST）。
Nucleic Acids Res. 2014 Jan;42(Database issue):D206-14. doi: 10.1093/nar/gkt1226. Epub 2013 Nov 29.
2
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler.SOAPdenovo2：一种经验丰富的、内存效率高的短读长从头组装器。
Gigascience. 2012 Dec 27;1(1):18. doi: 10.1186/2047-217X-1-18.
3
Draft Genome Sequence of Pseudoalteromonas luteoviolacea Strain B (ATCC 29581).紫色假交替单胞菌菌株B（ATCC 29581）的基因组序列草图
Genome Announc. 2013 Feb 28;1(2):e0004813. doi: 10.1128/genomeA.00048-13.
4
Violacein and related tryptophan metabolites produced by Chromobacterium violaceum: biosynthetic mechanism and pathway for construction of violacein core.紫色杆菌产生的紫色素和相关色氨酸代谢物：生物合成机制和构建紫色素核心的途径。
Appl Microbiol Biotechnol. 2011 Sep;91(6):1463-75. doi: 10.1007/s00253-011-3468-z. Epub 2011 Jul 22.
5
Characterization of a gene cluster and its putative promoter region for violacein biosynthesis in Pseudoalteromonas sp. 520P1.对假交替单胞菌 520P1 中类黑囊菌素生物合成的基因簇及其假定启动子区的特征描述。
Appl Microbiol Biotechnol. 2011 Jun;90(6):1963-71. doi: 10.1007/s00253-011-3203-9. Epub 2011 Apr 7.
6
Analysis of the Pseudoalteromonas tunicata genome reveals properties of a surface-associated life style in the marine environment.对海鞘假交替单胞菌基因组的分析揭示了其在海洋环境中与表面相关的生活方式的特性。
PLoS One. 2008 Sep 24;3(9):e3252. doi: 10.1371/journal.pone.0003252.
7
Quorum sensing signaling molecules involved in the production of violacein by Pseudoalteromonas.与假交替单胞菌产生紫菌素相关的群体感应信号分子。
Biosci Biotechnol Biochem. 2008 Jul;72(7):1958-61. doi: 10.1271/bbb.80090. Epub 2008 Jul 7.
8
Isolation and characterization of two groups of novel marine bacteria producing violacein.两组产紫菌素的新型海洋细菌的分离与鉴定
Mar Biotechnol (NY). 2008 Mar-Apr;10(2):128-32. doi: 10.1007/s10126-007-9046-9. Epub 2007 Oct 30.
9
Identifying bacterial genes and endosymbiont DNA with Glimmer.使用Glimmer识别细菌基因和内共生体DNA。
Bioinformatics. 2007 Mar 15;23(6):673-9. doi: 10.1093/bioinformatics/btm009. Epub 2007 Jan 19.
10
Regulatory circuits and communication in Gram-negative bacteria.革兰氏阴性菌中的调控回路与通讯
Nat Rev Microbiol. 2004 Jul;2(7):581-92. doi: 10.1038/nrmicro924.
Zotero 插件