Suppr超能文献

使用特征序列扩增法(SSAM)扩增和检测微小RNA(miRNA)及非编码RNA(ncRNA)的方法和组合物。

Methods and compositions for amplification and detection of microRNAs (miRNAs) and noncoding RNAs (ncRNAs) using the signature sequence amplification method (SSAM).

作者信息

Ginsberg Stephen D, Che Shaoli

机构信息

Center for Dementia Research, Nathan Kline Institute, NYU Langone Medical Center, 140 Old Orangeburg Road, Orangeburg, NY 10962, 845-398-2170, USA.

出版信息

Recent Adv DNA Gene Seq. 2014;8(1):2-9. doi: 10.2174/2352092208666141001154206.

Abstract

The signature sequence amplification method (SSAM) described herein is an approach for amplifying noncoding RNA (ncRNA), microRNA (miRNA), and small polynucleotide sequences. A key point of the SSAM technology is the generation of signature sequences. The signature sequences include target sequences (miRNA, ncRNA, and/or any small polynucleotide sequence) flanked by two DNA fragments. Target sequences can be amplified through DNA synthesis, RNA synthesis, or the combination of DNA and RNA synthesis. The amplification of signature sequences provides an efficient and reproducible mechanism to determine the presence or absence of the target miRNAs/ncRNAs, to analyze the quantities of the miRNAs in biological samples, and for miRNA/ncRNA profiling.

摘要

本文所述的特征序列扩增方法(SSAM)是一种用于扩增非编码RNA(ncRNA)、微小RNA(miRNA)和小多核苷酸序列的方法。SSAM技术的一个关键点是特征序列的生成。特征序列包括由两个DNA片段侧翼的靶序列(miRNA、ncRNA和/或任何小多核苷酸序列)。靶序列可以通过DNA合成、RNA合成或DNA与RNA合成的组合来扩增。特征序列的扩增提供了一种高效且可重复的机制,用于确定靶miRNA/ncRNA的存在与否、分析生物样品中miRNA的数量以及进行miRNA/ncRNA谱分析。

相似文献

2
DeepBase: annotation and discovery of microRNAs and other noncoding RNAs from deep-sequencing data.
Methods Mol Biol. 2012;822:233-48. doi: 10.1007/978-1-61779-427-8_16.
4
mRAP, a sensitive method for determination of microRNA expression profiles.
Methods. 2007 Oct;43(2):118-22. doi: 10.1016/j.ymeth.2007.04.006.
5
Non-coding RNAs in endometriosis: a narrative review.
Hum Reprod Update. 2018 Jul 1;24(4):497-515. doi: 10.1093/humupd/dmy014.
6
A highly sensitive and selective homogenous assay for profiling microRNA expression.
Biosens Bioelectron. 2014 Apr 15;54:650-5. doi: 10.1016/j.bios.2013.11.046. Epub 2013 Nov 25.
7
A three-line lateral flow biosensor for logic detection of microRNA based on Y-shaped junction DNA and target recycling amplification.
Anal Bioanal Chem. 2016 Nov;408(28):8195-8202. doi: 10.1007/s00216-016-9925-x. Epub 2016 Sep 13.
8
Isothermal Amplification for MicroRNA Detection: From the Test Tube to the Cell.
Acc Chem Res. 2017 Apr 18;50(4):1059-1068. doi: 10.1021/acs.accounts.7b00040. Epub 2017 Mar 29.
9
A simple molecular beacon with duplex-specific nuclease amplification for detection of microRNA.
Analyst. 2016 Feb 7;141(3):1071-6. doi: 10.1039/c5an02312b. Epub 2015 Dec 21.
10
Target-assisted FRET signal amplification for ultrasensitive detection of microRNA.
Analyst. 2019 Mar 25;144(7):2304-2311. doi: 10.1039/c8an02266f.

引用本文的文献

2
[Effect of Long Non-coding RNA SPRY4-IT1 on Invasion and Migration of A549 Cells].
Zhongguo Fei Ai Za Zhi. 2015 Aug;18(8):487-92. doi: 10.3779/j.issn.1009-3419.2015.08.07.

本文引用的文献

2
Detection of small noncoding RNAs by in situ hybridization using probes of 2'-O-methyl RNA + LNA.
Methods Mol Biol. 2014;1173:113-21. doi: 10.1007/978-1-4939-0931-5_10.
3
Epigenetically regulated microRNAs and their prospect in cancer diagnosis.
Expert Rev Mol Diagn. 2014 Jul;14(6):673-83. doi: 10.1586/14737159.2014.925399. Epub 2014 Jun 10.
4
Micro spies from the brain to the periphery: new clues from studies on microRNAs in neuropsychiatric disorders.
Front Cell Neurosci. 2014 Mar 11;8:75. doi: 10.3389/fncel.2014.00075. eCollection 2014.
5
MicroRNAs regulate neuronal plasticity and are involved in pain mechanisms.
Front Cell Neurosci. 2014 Feb 11;8:31. doi: 10.3389/fncel.2014.00031. eCollection 2014.
6
Refining microRNA target predictions: sorting the wheat from the chaff.
Biochem Biophys Res Commun. 2014 Mar 21;445(4):780-4. doi: 10.1016/j.bbrc.2014.01.181. Epub 2014 Feb 10.
7
Concise review: MicroRNAs as modulators of stem cells and angiogenesis.
Stem Cells. 2014 May;32(5):1059-66. doi: 10.1002/stem.1629.
8
Selective distribution and dynamic modulation of miRNAs in the synapse and its possible role in Alzheimer's Disease.
Brain Res. 2014 Oct 10;1584:80-93. doi: 10.1016/j.brainres.2013.12.009. Epub 2013 Dec 16.
9
miRBase: annotating high confidence microRNAs using deep sequencing data.
Nucleic Acids Res. 2014 Jan;42(Database issue):D68-73. doi: 10.1093/nar/gkt1181. Epub 2013 Nov 25.
10
Simultaneous isolation of high-quality DNA, RNA, miRNA and proteins from tissues for genomic applications.
Nat Protoc. 2013 Nov;8(11):2240-55. doi: 10.1038/nprot.2013.141. Epub 2013 Oct 17.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验