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猪醛酮还原酶家族1成员C1中C末端区域的结构重要性及其对酶活性的影响。

Structural importance of the C-terminal region in pig aldo-keto reductase family 1 member C1 and their effects on enzymatic activity.

作者信息

Son Minky, Park Chanin, Kwon Seul Gi, Bang Woo Young, Kim Sam Woong, Kim Chul Wook, Lee Keun Woo

机构信息

Division of Applied Life Science (BK21 Plus), Systems and Synthetic Agrobiotech Center (SSAC), Plant Molecular Biology and Biotechnology Research Center (PMBBRC), Research Institute of Natural Science (RINS), Gyeongsang National University (GNU), 501 Jinju-daero, Jinju, 660-701, Republic of Korea.

Swine Science and Technology Center, Gyeongnam National University of Science & Technology, Jinju, 660-758, Korea.

出版信息

BMC Struct Biol. 2015 Jan 13;15:1. doi: 10.1186/s12900-014-0028-7.

Abstract

BACKGROUND

Pig aldo-keto reductase family 1 member C1 (AKR1C1) belongs to AKR superfamily which catalyzes the NAD(P)H-dependent reduction of various substrates including steroid hormones. Previously we have reported two paralogous pig AKR1C1s, wild-type AKR1C1 (C-type) and C-terminal-truncated AKR1C1 (T-type). Also, the C-terminal region significantly contributes to the NADPH-dependent reductase activity for 5α-DHT reduction. Molecular modeling studies combined with kinetic experiments were performed to investigate structural and enzymatic differences between wild-type AKR1C1 C-type and T-type.

RESULTS

The results of the enzyme kinetics revealed that Vmax and kcat values of the T-type were 2.9 and 1.6 folds higher than those of the C-type. Moreover, catalytic efficiency was also 1.9 fold higher in T-type compared to C-type. Since x-ray crystal structures of pig AKR1C1 were not available, three dimensional structures of the both types of the protein were predicted using homology modeling methodology and they were used for molecular dynamics simulations. The structural comparisons between C-type and T-type showed that 5α-DHT formed strong hydrogen bonds with catalytic residues such as Tyr55 and His117 in T-type. In particular, C3 ketone group of the substrate was close to Tyr55 and NADPH in T-type.

CONCLUSIONS

Our results showed that 5α-DHT binding in T-type was more favorable for catalytic reaction to facilitate hydride transfer from the cofactor, and were consistent with experimental results. We believe that our study provides valuable information to understand important role of C-terminal region that affects enzymatic properties for 5α-DHT, and further molecular mechanism for the enzyme kinetics of AKR1C1 proteins.

摘要

背景

猪醛酮还原酶家族1成员C1(AKR1C1)属于AKR超家族,可催化包括甾体激素在内的多种底物的NAD(P)H依赖性还原反应。此前我们报道了两种猪AKR1C1旁系同源物,野生型AKR1C1(C型)和C末端截短的AKR1C1(T型)。此外,C末端区域对5α-二氢睾酮(5α-DHT)还原的NADPH依赖性还原酶活性有显著贡献。通过分子模拟研究结合动力学实验,研究野生型AKR1C1 C型和T型之间的结构和酶学差异。

结果

酶动力学结果显示,T型的Vmax和kcat值分别比C型高2.9倍和1.6倍。此外,T型的催化效率也比C型高1.9倍。由于无法获得猪AKR1C1的X射线晶体结构,因此使用同源建模方法预测了这两种蛋白质的三维结构,并将其用于分子动力学模拟。C型和T型之间的结构比较表明,5α-DHT在T型中与催化残基如Tyr55和His117形成了强氢键。特别是,底物的C3酮基在T型中靠近Tyr55和NADPH。

结论

我们的结果表明,T型中5α-DHT的结合更有利于催化反应,促进辅酶氢化物的转移,这与实验结果一致。我们相信,我们的研究为理解影响5α-DHT酶学性质的C末端区域的重要作用以及AKR

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f10/4310174/29341bc712a9/12900_2014_28_Fig1_HTML.jpg

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