Mo Jue, Maudsley Stuart, Martin Bronwen, Siddiqui Sana, Cheung Huey, Johnson Calvin A
Division of Computational Bioscience, Center for Information Technology, National Institutes of Health, Bethesda, MD 20892, USA.
Receptor Pharmacology Unit, National Institute on Aging, National Institutes of Health, Baltimore, MD 21224, USA.
ACM Conf Bioinform Comput Biol Biomed Inform (2013). 2013;2013:569. doi: 10.1145/2506583.2506637.
Research into modeling the progression of Alzheimer's disease (AD) has made recent progress in identifying plasma proteomic biomarkers to identify the disease at the pre-clinical stage. In contrast with cerebral spinal fluid (CSF) biomarkers and PET imaging, plasma biomarker diagnoses have the advantage of being cost-effective and minimally invasive, thereby improving our understanding of AD and hopefully leading to early interventions as research into this subject advances. The Alzheimer's Disease Neuroimaging Initiative* (ADNI) has collected data on 190 plasma analytes from individuals diagnosed with AD as well subjects with mild cognitive impairment and cognitively normal (CN) controls. We propose an approach to classify subjects as AD or CN via an ensemble of classifiers trained and validated on ADNI data. Classifier performance is enhanced by an augmentation of a selective biomarker feature space with principal components obtained from the entire set of biomarkers. This procedure yields accuracy of 89% and area under the ROC curve of 94%.
对阿尔茨海默病(AD)进展建模的研究在识别血浆蛋白质组学生物标志物以在临床前阶段识别该疾病方面取得了最新进展。与脑脊液(CSF)生物标志物和PET成像相比,血浆生物标志物诊断具有成本效益高和微创的优势,从而增进了我们对AD的理解,并有望随着该主题研究的推进实现早期干预。阿尔茨海默病神经成像计划*(ADNI)收集了来自被诊断患有AD的个体以及轻度认知障碍和认知正常(CN)对照受试者的190种血浆分析物的数据。我们提出了一种通过在ADNI数据上训练和验证的分类器集成将受试者分类为AD或CN的方法。通过从整个生物标志物集合中获得的主成分增强选择性生物标志物特征空间,提高了分类器性能。该程序的准确率为89%,ROC曲线下面积为94%。