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时间和空间分辨生物分子科学中的X射线衍射

X-ray diffraction in temporally and spatially resolved biomolecular science.

作者信息

Helliwell John R, Brink Alice, Kaenket Surasak, Starkey Victoria Laurina, Tanley Simon W M

机构信息

School of Chemistry, University of Manchester M13 9PL, UK.

出版信息

Faraday Discuss. 2015;177:429-41. doi: 10.1039/c4fd00166d.

Abstract

Time-resolved Laue protein crystallography at the European Synchrotron Radiation Facility (ESRF) opened up the field of sub-nanosecond protein crystal structure analyses. There are a limited number of such time-resolved studies in the literature. Why is this? The X-ray laser now gives us femtosecond (fs) duration pulses, typically 10 fs up to ∼50 fs. Their use is attractive for the fastest time-resolved protein crystallography studies. It has been proposed that single molecules could even be studied with the advantage of being able to measure X-ray diffraction from a 'crystal lattice free' single molecule, with or without temporal resolved structural changes. This is altogether very challenging R&D. So as to assist this effort we have undertaken studies of metal clusters that bind to proteins, both 'fresh' and after repeated X-ray irradiation to assess their X-ray-photo-dynamics, namely Ta6Br12, K2PtI6 and K2PtBr6 bound to a test protein, hen egg white lysozyme. These metal complexes have the major advantage of being very recognisable shapes (pseudo spherical or octahedral) and thereby offer a start to (probably very difficult) single molecule electron density map interpretations, both static and dynamic. A further approach is to investigate the X-ray laser beam diffraction strength of a well scattering nano-cluster; an example from nature being the iron containing ferritin. Electron crystallography and single particle electron microscopy imaging offers alternatives to X-ray structural studies; our structural studies of crustacyanin, a 320 kDa protein carotenoid complex, can be extended either by electron based techniques or with the X-ray laser representing a fascinating range of options. General outlook remarks concerning X-ray, electron and neutron macromolecular crystallography as well as 'NMR crystallography' conclude the article.

摘要

欧洲同步辐射装置(ESRF)的时间分辨劳厄蛋白质晶体学开启了亚纳秒级蛋白质晶体结构分析领域。文献中此类时间分辨研究的数量有限。原因何在?现在的X射线激光能产生飞秒(fs)级持续时间的脉冲,通常为10 fs至约50 fs。它们在最快的时间分辨蛋白质晶体学研究中很有吸引力。有人提出甚至可以研究单分子,其优势在于能够测量来自“无晶格”单分子的X射线衍射,无论有无时间分辨的结构变化。这完全是极具挑战性的研发工作。为了助力此项工作,我们对与蛋白质结合的金属簇进行了研究,包括“新鲜的”以及经过多次X射线照射后的金属簇,以评估它们的X射线光动力学,即与测试蛋白鸡蛋清溶菌酶结合的Ta6Br12、K2PtI6和K2PtBr6。这些金属配合物的主要优势在于具有非常容易识别的形状(假球形或八面体),从而为(可能非常困难的)单分子电子密度图的静态和动态解释提供了开端。另一种方法是研究具有良好散射性的纳米簇的X射线激光束衍射强度;自然界中的一个例子是含铁的铁蛋白。电子晶体学和单颗粒电子显微镜成像为X射线结构研究提供了替代方法;我们对320 kDa蛋白质类胡萝卜素复合物虾青素的结构研究可以通过基于电子的技术进行扩展,或者利用X射线激光,这代表了一系列迷人的选择。文章最后对X射线、电子和中子大分子晶体学以及“核磁共振晶体学”进行了总体展望。

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