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有和没有与N-乙酰-L-谷氨酸结合的His标签的木质部难养菌N-乙酰-L-谷氨酸合酶/激酶的N-乙酰转移酶结构域的结构

Structures of the N-acetyltransferase domain of Xylella fastidiosa N-acetyl-L-glutamate synthase/kinase with and without a His tag bound to N-acetyl-L-glutamate.

作者信息

Zhao Gengxiang, Jin Zhongmin, Allewell Norma M, Tuchman Mendel, Shi Dashuang

机构信息

Center for Genetic Medicine Research and Department of Integrative Systems Biology, Children's National Medical Center, The George Washington University, Washington, DC 20010, USA.

Southeast Regional Collaborative Access Team, Advanced Photon Source, Argonne National Laboratory, Argonne, IL 60439, USA.

出版信息

Acta Crystallogr F Struct Biol Commun. 2015 Jan 1;71(Pt 1):86-95. doi: 10.1107/S2053230X14026788.

Abstract

Structures of the catalytic N-acetyltransferase (NAT) domain of the bifunctional N-acetyl-L-glutamate synthase/kinase (NAGS/K) from Xylella fastidiosa bound to N-acetyl-L-glutamate (NAG) with and without an N-terminal His tag have been solved and refined at 1.7 and 1.4 Å resolution, respectively. The NAT domain with an N-terminal His tag crystallized in space group P4(1)2(1)2, with unit-cell parameters a=b=51.72, c=242.31 Å. Two subunits form a molecular dimer in the asymmetric unit, which contains ∼41% solvent. The NAT domain without an N-terminal His tag crystallized in space group P21, with unit-cell parameters a=63.48, b=122.34, c=75.88 Å, β=107.6°. Eight subunits, which form four molecular dimers, were identified in the asymmetric unit, which contains ∼38% solvent. The structures with and without the N-terminal His tag provide an opportunity to evaluate how the His tag affects structure and function. Furthermore, multiple subunits in different packing environments allow an assessment of the plasticity of the NAG binding site, which might be relevant to substrate binding and product release. The dimeric structure of the X. fastidiosa N-acetytransferase (xfNAT) domain is very similar to that of human N-acetyltransferase (hNAT), reinforcing the notion that mammalian NAGS is evolutionally derived from bifunctional bacterial NAGS/K.

摘要

已分别解析并精修了来自桑氏假单胞菌的双功能N - 乙酰 - L - 谷氨酸合酶/激酶(NAGS/K)的催化N - 乙酰转移酶(NAT)结构域与N - 乙酰 - L - 谷氨酸(NAG)结合时以及未带N端His标签时的结构,分辨率分别为1.7 Å和1.4 Å。带N端His标签的NAT结构域在空间群P4(1)2(1)2中结晶,晶胞参数a = b = 51.72,c = 242.31 Å。在不对称单元中有两个亚基形成一个分子二聚体,溶剂含量约为41%。未带N端His标签的NAT结构域在空间群P21中结晶,晶胞参数a = 63.48,b = 122.34,c = 75.88 Å,β = 107.6°。在不对称单元中鉴定出八个亚基,形成四个分子二聚体,溶剂含量约为38%。带和不带N端His标签的结构提供了一个评估His标签如何影响结构和功能的机会。此外,处于不同堆积环境中的多个亚基使得能够评估NAG结合位点的可塑性,这可能与底物结合和产物释放有关。桑氏假单胞菌N - 乙酰转移酶(xfNAT)结构域的二聚体结构与人N - 乙酰转移酶(hNAT)的非常相似,强化了哺乳动物NAGS在进化上源自双功能细菌NAGS/K的观点。

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