Setense分枝杆菌模式菌株DSM-45070和非致病菌株Manresensis的基因组序列草图，该非致病菌株从西班牙加泰罗尼亚曼雷萨的卡德内尔河岸分离得到。
Draft Genome Sequences of Mycobacterium setense Type Strain DSM-45070 and the Nonpathogenic Strain Manresensis, Isolated from the Bank of the Cardener River in Manresa, Catalonia, Spain.
作者信息
Rech Gabriel, Vilaplana Cristina, Velasco Juan, Pluvinet Raquel, Santín Sheila, Prat Cristina, Julián Esther, Alcaide Fernando, Comas Iñaki, Sumoy Lauro, Cardona Pere-Joan
机构信息
Genomics and Bioinformatics Group, Institute for Predictive and Personalized Medicine of Cancer (IMPPC), Can Ruti Campus, Badalona, Catalonia, Spain
Genomics and Bioinformatics Group, Institute for Predictive and Personalized Medicine of Cancer (IMPPC), Can Ruti Campus, Badalona, Catalonia, Spain.
出版信息
Genome Announc. 2015 Feb 5;3(1):e01485-14. doi: 10.1128/genomeA.01485-14.
Abstract
We present here the draft genome sequences of two Mycobacterium setense strains. One of them corresponds to the M. setense type strain DSM-45070, originally isolated from a patient with a posttraumatic chronic skin abscess. The other one corresponds to the nonpathogenic M. setense strain Manresensis, isolated from the Cardener River crossing Manresa, Catalonia, Spain. A comparative genomic analysis shows a smaller genome size and fewer genes in M. setense strain Manresensis relative to those of the type strain, and it shows the genome segments unique to each strain.
摘要
我们在此展示两株塞滕斯分枝杆菌菌株的基因组序列草图。其中一株对应塞滕斯分枝杆菌模式菌株DSM-45070，最初从一名患有创伤后慢性皮肤脓肿的患者身上分离得到。另一株对应非致病性的塞滕斯分枝杆菌曼雷森西斯菌株，从西班牙加泰罗尼亚曼雷萨市的卡德内尔河分离得到。比较基因组分析表明，相对于模式菌株，塞滕斯分枝杆菌曼雷森西斯菌株的基因组大小更小，基因数量更少，并且显示出每个菌株特有的基因组片段。
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本文引用的文献
1
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).SEED 与利用子系统技术进行快速微生物基因组注释（RAST）。
Nucleic Acids Res. 2014 Jan;42(Database issue):D206-14. doi: 10.1093/nar/gkt1226. Epub 2013 Nov 29.
2
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
3
FLASH: fast length adjustment of short reads to improve genome assemblies.FLASH：快速调整短读长以提高基因组组装质量。
Bioinformatics. 2011 Nov 1;27(21):2957-63. doi: 10.1093/bioinformatics/btr507. Epub 2011 Sep 7.
4
First report on isolation and molecular characterization of clinical Mycobacterium setense isolates in Asia.亚洲地区首次报道分离和分子特征鉴定临床分枝杆菌的研究。
Jpn J Infect Dis. 2011;64(3):234-6.
5
progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement.渐进紫：具有基因增益、缺失和重排的多基因组比对。
PLoS One. 2010 Jun 25;5(6):e11147. doi: 10.1371/journal.pone.0011147.
6
Fast and accurate short read alignment with Burrows-Wheeler transform.使用Burrows-Wheeler变换进行快速准确的短读比对。
Bioinformatics. 2009 Jul 15;25(14):1754-60. doi: 10.1093/bioinformatics/btp324. Epub 2009 May 18.
7
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