Roodgar Morteza, Ross Cody T, Kenyon Nicholas J, Marcelino Gretchen, Smith David Glenn
Graduate Group of Comparative Pathology, School of Veterinary Medicine, University of California, Davis, United States; Molecular Anthropology Laboratory, Department of Anthropology, University of California, Davis, United States; California National Primate Research Center (CNPRC), University of California, Davis, United States.
Molecular Anthropology Laboratory, Department of Anthropology, University of California, Davis, United States; Santa Fe Institute, Santa Fe, NM, United States.
Infect Genet Evol. 2015 Apr;31:236-44. doi: 10.1016/j.meegid.2015.01.015. Epub 2015 Feb 9.
Inducible nitric oxide synthase (iNOS) is an enzyme that plays a key role in intracellular immune response against respiratory infections. Since various species of nonhuman primates exhibit different levels of susceptibility to infectious respiratory diseases, and since variation in regulatory regions of genes is thought to play a key role in expression levels of genes, two candidate regulatory regions of iNOS were mapped, sequenced, and compared across five species of nonhuman primates: African green monkeys (Chlorocebus sabaeus), pig-tailed macaques (Macaca nemestrina), cynomolgus macaques (Macaca fascicularis), Indian rhesus macaques (Macaca mulatta), and Chinese rhesus macaques (M. mulatta). In addition, we conducted an in silico analysis of the transcription factor binding sites associated with genetic variation in these two candidate regulatory regions across species. We found that only one of the two candidate regions showed strong evidence of involvement in iNOS regulation. Specifically, we found evidence of 13 conserved binding site candidates linked to iNOS regulation: AP-1, C/EBPB, CREB, GATA-1, GATA-3, NF-AT, NF-AT5, NF-κB, KLF4, Oct-1, PEA3, SMAD3, and TCF11. Additionally, we found evidence of interspecies variation in binding sites for several regulatory elements linked to iNOS (GATA-3, GATA-4, KLF6, SRF, STAT-1, STAT-3, OLF-1 and HIF-1) across species, especially in African green monkeys relative to other species. Given the key role of iNOS in respiratory immune response, the findings of this study might help guide the direction of future studies aimed to uncover the molecular mechanisms underlying the increased susceptibility of African green monkeys to several viral and bacterial respiratory infections.
诱导型一氧化氮合酶(iNOS)是一种在针对呼吸道感染的细胞内免疫反应中起关键作用的酶。由于各种非人类灵长类动物对传染性呼吸道疾病表现出不同程度的易感性,并且由于基因调控区域的变异被认为在基因表达水平中起关键作用,因此对iNOS的两个候选调控区域进行了定位、测序,并在五种非人类灵长类动物中进行了比较:非洲绿猴(Chlorocebus sabaeus)、猪尾猕猴(Macaca nemestrina)、食蟹猕猴(Macaca fascicularis)、印度恒河猴(Macaca mulatta)和中国恒河猴(M. mulatta)。此外,我们对这两个候选调控区域跨物种的遗传变异相关的转录因子结合位点进行了计算机分析。我们发现,两个候选区域中只有一个显示出参与iNOS调控的有力证据。具体而言,我们发现了13个与iNOS调控相关的保守结合位点候选证据:AP-1、C/EBPB、CREB、GATA-1、GATA-3、NF-AT、NF-AT5、NF-κB、KLF4、Oct-1、PEA3、SMAD3和TCF11。此外,我们发现跨物种与iNOS相关的几个调控元件(GATA-3、GATA-4、KLF6、SRF、STAT-1、STAT-3、OLF-1和HIF-1)的结合位点存在种间变异证据,特别是相对于其他物种,非洲绿猴的变异尤为明显。鉴于iNOS在呼吸道免疫反应中的关键作用,本研究的结果可能有助于指导未来旨在揭示非洲绿猴对几种病毒和细菌呼吸道感染易感性增加背后分子机制的研究方向。