重新审视寡核苷酸相互作用的立体特异性:无杂手性杂交及核酶/脱氧核酶活性的证据
Stereospecificity of oligonucleotide interactions revisited: no evidence for heterochiral hybridization and ribozyme/DNAzyme activity.
作者信息
Hoehlig Kai, Bethge Lucas, Klussmann Sven
机构信息
NOXXON Pharma AG, Berlin, Germany.
出版信息
PLoS One. 2015 Feb 13;10(2):e0115328. doi: 10.1371/journal.pone.0115328. eCollection 2015.
A major challenge for the application of RNA- or DNA-oligonucleotides in biotechnology and molecular medicine is their susceptibility to abundant nucleases. One intriguing possibility to tackle this problem is the use of mirror-image (l-)oligonucleotides. For aptamers, this concept has successfully been applied to even develop therapeutic agents, so-called Spiegelmers. However, for technologies depending on RNA/RNA or RNA/DNA hybridization, like antisense or RNA interference, it has not been possible to use mirror-image oligonucleotides because Watson-Crick base pairing of complementary strands is (thought to be) stereospecific. Many scientists consider this a general principle if not a dogma. A recent publication proposing heterochiral Watson-Crick base pairing and sequence-specific hydrolysis of natural RNA by mirror-image ribozymes or DNAzymes (and vice versa) prompted us to systematically revisit the stereospecificity of oligonucleotides hybridization and catalytic activity. Using hyperchromicity measurements we demonstrate that hybridization only occurs among homochiral anti-parallel complementary oligonucleotide strands. As expected, achiral PNA hybridizes to RNA and DNA irrespective of their chirality. In functional assays we could not confirm an alleged heterochiral hydrolytic activity of ribozymes or DNAzymes. Our results confirm a strict stereospecificity of oligonucleotide hybridization and clearly argue against the possibility to use mirror-image oligonucleotides for gene silencing or antisense applications.
RNA或DNA寡核苷酸在生物技术和分子医学中的应用面临的一个主要挑战是它们易受大量核酸酶的影响。解决这个问题的一个有趣可能性是使用镜像(l-)寡核苷酸。对于适体而言,这一概念已成功应用于开发治疗剂,即所谓的 Spiegelmers。然而,对于依赖RNA/RNA或RNA/DNA杂交的技术,如反义技术或RNA干扰,由于互补链的沃森-克里克碱基配对(被认为)具有立体特异性,因此无法使用镜像寡核苷酸。许多科学家认为这是一个普遍原则,甚至是一个教条。最近一篇提出异手性沃森-克里克碱基配对以及镜像核酶或脱氧核酶对天然RNA进行序列特异性水解(反之亦然)的论文促使我们系统地重新审视寡核苷酸杂交的立体特异性和催化活性。通过增色法测量,我们证明杂交仅发生在同手性反平行互补寡核苷酸链之间。正如预期的那样,无手性的肽核酸(PNA)与RNA和DNA杂交,而不考虑它们的手性。在功能测定中,我们无法证实核酶或脱氧核酶所谓的异手性水解活性。我们的结果证实了寡核苷酸杂交具有严格的立体特异性,并明确反对将镜像寡核苷酸用于基因沉默或反义应用的可能性。