Speck-Planche Alejandro, Cordeiro M N D S
REQUIMTE/Department of Chemistry and Biochemistry, University of Porto, 4169-007 Porto, Portugal.
Mini Rev Med Chem. 2015;15(3):194-202. doi: 10.2174/138955751503150312120519.
Neglected diseases are infections that thrive mainly among underdeveloped countries, particularly those belonging to regions found in Asia, Africa, and America. One of the most complex diseases is noma, a dangerous health condition characterized by a polymicrobial and opportunistic nature. The search for potent and safer antibacterial agents against this disease is therefore a goal of particular interest. Chemoinformatics can be used to rationalize the discovery of drug candidates, diminishing time and financial resources. However, in the case of noma, there is no in silico model available for its use in the discovery of efficacious antibacterial agents. This work is devoted to report the first mtk-QSBER model, which integrates dissimilar kinds of chemical and biological data. The model was generated with the aim of simultaneously predicting activity against bacteria present in noma, and ADMET (absorption, distribution, metabolism, elimination, toxicity) parameters. The mtk-QSBER model was constructed by employing a large and heterogeneous dataset of chemicals and displayed accuracies higher than 90% in both training and prediction sets. We confirmed the practical applicability of the model by predicting multiple profiles of the investigational antibacterial drug delafloxacin, and the predictions converged with the experimental reports. To date, this is the first model focused on the virtual search for desirable anti-noma agents.
被忽视的疾病是主要在不发达国家肆虐的感染性疾病,尤其是亚洲、非洲和美洲一些地区的国家。最复杂的疾病之一是坏疽性口炎,这是一种具有多微生物和机会性特征的危险健康状况。因此,寻找针对这种疾病的有效且更安全的抗菌剂是一个特别受关注的目标。化学信息学可用于使候选药物的发现合理化,减少时间和资金资源。然而,就坏疽性口炎而言,尚无用于发现有效抗菌剂的计算机模型。这项工作致力于报告首个整合了不同类型化学和生物学数据的mtk-QSBER模型。生成该模型的目的是同时预测对坏疽性口炎中存在的细菌的活性以及ADMET(吸收、分布、代谢、排泄、毒性)参数。mtk-QSBER模型是通过使用大量异质化学数据集构建的,在训练集和预测集中的准确率均高于90%。我们通过预测研究性抗菌药物德拉氟沙星的多种特性证实了该模型的实际适用性,并且预测结果与实验报告一致。迄今为止,这是首个专注于虚拟搜索理想抗坏疽性口炎药物的模型。