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通过常规聚合酶链反应检测基因组DNA以估计与牛乳腺炎相关的金黄色葡萄球菌和大肠杆菌载量的检测限。

Limit of detection of genomic DNA by conventional PCR for estimating the load of Staphylococcus aureus and Escherichia coli associated with bovine mastitis.

作者信息

Chandrashekhar K M, Isloor Shrikrishna, Veeresh B H, Hegde Raveendra, Rathnamma D, Murag Shivaraj, Veeregowda B M, Upendra H A, Hegde Nagendra R

机构信息

Department of Microbiology, Karnataka Veterinary Animal and Fisheries Sciences University, Hebbal, Bengaluru, 560024, India.

Institute of Animal Health and Veterinary Biologicals, Karnataka Veterinary Animal and Fisheries Sciences University, Hebbal, Bengaluru, 560024, India.

出版信息

Folia Microbiol (Praha). 2015 Nov;60(6):465-72. doi: 10.1007/s12223-015-0384-0. Epub 2015 Mar 15.

Abstract

Detection of mastitis-associated bacteria can be accomplished by culturing or by molecular techniques. On the other hand, rapid and inexpensive methods to enumerate bacterial load without culturing can be better achieved by molecular methods. Staphylococcus aureus and Escherichia coli are the predominant bacterial pathogens associated with bovine mastitis. Here, we describe the application of conventional PCR for the limit of detection (LOD) of genomic DNA of S. aureus and E. coli based on single-copy genes. The selected genes were thermonuclease (nuc), aureolysin (aur), and staphopain A (scpA) for S. aureus and β-D-glucuronidase A (uidA), cytochrome d oxidase (cyd), and rodA (a gene affecting cell shape and methicillin sensitivity) for E. coli. The LOD was 5.3, 15.9, and 143 pg for aur, nuc, and scpA genes, corresponding to S. aureus genomic copies of 1.75 × 10(3), 5.16 × 10(3), and 4.71 × 10(4), respectively. The LOD was 0.45, 12.3 and 109 pg for uidA, rodA and cyd genes, corresponding to E. coli genome copies of 8.91 × 10(1), 2.43 × 10(3), and 2.16 × 10(4), respectively. Application of uidA and aur PCRs to field strains revealed that as low as approximately 100 genome copies of E. coli and 1000-10,000 copies of S. aureus could be detected. This study is the first to report LOD of genomic DNA using conventional PCR for aur and scpA genes of S. aureus, and rodA and cyd genes of E. coli. The results should be useful for developing assays to assess bacterial load in milk and to determine the load that contributes to subclinical or clinical mastitis.

摘要

乳腺炎相关细菌的检测可通过培养或分子技术来完成。另一方面,不通过培养就能快速且低成本地计数细菌载量的方法,利用分子方法能更好地实现。金黄色葡萄球菌和大肠杆菌是与牛乳腺炎相关的主要细菌病原体。在此,我们描述了基于单拷贝基因的常规PCR在检测金黄色葡萄球菌和大肠杆菌基因组DNA检测限(LOD)方面的应用。为金黄色葡萄球菌选择的基因是热核酸酶(nuc)、金黄色溶素(aur)和葡萄球菌蛋白酶A(scpA),为大肠杆菌选择的基因是β-D-葡萄糖醛酸酶A(uidA)、细胞色素d氧化酶(cyd)和rodA(一个影响细胞形状和对甲氧西林敏感性的基因)。aur、nuc和scpA基因的检测限分别为5.3、15.9和143 pg,分别对应金黄色葡萄球菌基因组拷贝数为1.75×10³、5.16×10³和4.71×10⁴。uidA、rodA和cyd基因的检测限分别为0.45、12.3和109 pg,分别对应大肠杆菌基因组拷贝数为8.91×10¹、2.43×10³和2.16×10⁴。将uidA和aur PCR应用于田间菌株表明,低至约100个大肠杆菌基因组拷贝和1000 - 10000个金黄色葡萄球菌拷贝都能被检测到。本研究首次报道了使用常规PCR检测金黄色葡萄球菌的aur和scpA基因以及大肠杆菌的rodA和cyd基因的基因组DNA检测限。这些结果对于开发评估牛奶中细菌载量以及确定导致亚临床或临床乳腺炎的载量的检测方法应是有用的。

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