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全外显子组测序确定OR2W3突变是常染色体显性遗传性视网膜色素变性的病因。

Whole-exome sequencing identifies OR2W3 mutation as a cause of autosomal dominant retinitis pigmentosa.

作者信息

Ma Xiangyu, Guan Liping, Wu Wei, Zhang Yao, Zheng Wei, Gao Yu-Tang, Long Jirong, Wu Na, Wu Long, Xiang Ying, Xu Bin, Shen Miaozhong, Chen Yanhua, Wang Yuewen, Yin Ye, Li Yingrui, Xu Haiwei, Xu Xun, Li Yafei

机构信息

Department of Epidemiology, College of Preventive Medicine, Third Military Medical University, Chongqing, People's Republic of China.

BGI-Shenzhen, Shenzhen, People's Republic of China.

出版信息

Sci Rep. 2015 Mar 18;5:9236. doi: 10.1038/srep09236.

Abstract

Retinitis pigmentosa (RP), a heterogeneous group of inherited ocular diseases, is a genetic condition that causes retinal degeneration and eventual vision loss. Though some genes have been identified to be associated with RP, still a large part of the clinical cases could not be explained. Here we reported a four-generation Chinese family with RP, during which 6 from 9 members of the second generation affected the disease. To identify the genetic defect in this family, whole-exome sequencing together with validation analysis by Sanger sequencing were performed to find possible pathogenic mutations. After a pipeline of database filtering, including public databases and in-house databases, a novel missense mutation, c. 424 C > T transition (p.R142W) in OR2W3 gene, was identified as a potentially causative mutation for autosomal dominant RP. The mutation co-segregated with the disease phenotype over four generations. This mutation was validated in another independent three-generation family. RT-PCR analysis also identified that OR2W3 gene was expressed in HESC-RPE cell line. The results will not only enhance our current understanding of the genetic basis of RP, but also provide helpful clues for designing future studies to further investigate genetic factors for familial RP.

摘要

视网膜色素变性(RP)是一组遗传性眼部疾病的统称,是一种导致视网膜变性并最终导致视力丧失的遗传疾病。尽管已经确定了一些与RP相关的基因,但仍有很大一部分临床病例无法得到解释。在此,我们报告了一个患有RP的四代中国家系,其中第二代的9名成员中有6名受该病影响。为了确定该家系中的遗传缺陷,我们进行了全外显子组测序,并通过桑格测序进行验证分析,以寻找可能的致病突变。经过一系列数据库筛选,包括公共数据库和内部数据库,我们在OR2W3基因中发现了一个新的错义突变,即c.424 C>T转换(p.R142W),被确定为常染色体显性RP的潜在致病突变。该突变在四代人中与疾病表型共分离。此突变在另一个独立的三代家系中得到验证。逆转录聚合酶链反应(RT-PCR)分析还表明,OR2W3基因在人胚胎干细胞-视网膜色素上皮(HESC-RPE)细胞系中表达。这些结果不仅将增进我们目前对RP遗传基础的理解,也为设计未来研究以进一步探究家族性RP的遗传因素提供有益线索。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/575d/4363838/2987914d1938/srep09236-f1.jpg

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