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超分子组装体整合建模中动力学的重要性。

The importance of dynamics in integrative modeling of supramolecular assemblies.

机构信息

Laboratory for Biomolecular Modeling, Institute of Bioengineering, School of Life Sciences, École Polytechnique Fédérale de Lausanne (EPFL) and Swiss Institute of Bioinformatics (SIB), Lausanne, Switzerland.

Laboratory for Biomolecular Modeling, Institute of Bioengineering, School of Life Sciences, École Polytechnique Fédérale de Lausanne (EPFL) and Swiss Institute of Bioinformatics (SIB), Lausanne, Switzerland.

出版信息

Curr Opin Struct Biol. 2015 Apr;31:28-34. doi: 10.1016/j.sbi.2015.02.018. Epub 2015 Mar 18.

Abstract

Revealing the atomistic architecture of supramolecular complexes is a fundamental step toward a deeper understanding of cellular functioning. To date, this formidable task is facilitated by an emerging array of integrative modeling approaches that combine experimental data from different sources. One major challenge these methods have to face is the treatment of the dynamic rearrangements of the individual subunits upon assembly. While this flexibility can be sampled at different levels, integrating native dynamic determinants with available experimental inputs can provide an effective way to reveal the molecular recognition mechanisms at the basis of supramolecular assembly.

摘要

揭示超分子复合物的原子结构是深入了解细胞功能的基本步骤。迄今为止,这一艰巨的任务得益于一系列新兴的综合建模方法,这些方法结合了来自不同来源的实验数据。这些方法面临的一个主要挑战是处理组装过程中各个亚基的动态重排。虽然这种灵活性可以在不同的水平上进行采样,但将天然动态决定因素与可用的实验输入相结合,可以提供一种有效的方法来揭示超分子组装基础上的分子识别机制。

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