Farlora Rodolfo, Nuñez-Acuña Gustavo, Gallardo-Escárate Cristian
Laboratory of Biotechnology and Aquatic Genomics, Interdisciplinary Center for Aquaculture Research (INCAR), University of Concepcion, P. O. Box 160-C, Concepción, Chile.
Laboratory of Biotechnology and Aquatic Genomics, Interdisciplinary Center for Aquaculture Research (INCAR), University of Concepcion, P. O. Box 160-C, Concepción, Chile.
Gene. 2015 Jun 10;564(1):73-80. doi: 10.1016/j.gene.2015.03.045. Epub 2015 Mar 23.
Prohibitins are evolutionarily conserved proteins present in multiple cellular compartments, and are involved in diverse cellular processes, including steroid hormone transcription and gametogenesis. In the present study, we report for the first time the characterization of the prohibitin-2 (Phb2) gene in the sea lice Caligus rogercresseyi. The CrPhb2 cDNA showed a total length of 1406 bp, which contained a predicted open reading frame (ORF) of 894 base pairs (bp) encoding for 298 amino acids. Multiple sequence alignments of prohibitin proteins from other arthropods revealed a high degree of amino acid sequence conservation. In silico Illumina read counts and RT-qPCR analyses showed a sex-dependent differential expression, with mRNA levels exhibiting a 1.7-fold (RT-qPCR) increase in adult females compared with adult males. A total of nine single nucleotide polymorphisms (SNPs) were identified, three were located in the 5' UTR of the Phb2 messenger and six in the ORF, but no mutations associated with sex were found. These results contribute to expand the present knowledge of the reproduction-related genes in C. rogercresseyi, and may be useful in future experiments aimed at controlling the impacts of sea lice in fish farming.
抑制素是存在于多个细胞区室中的进化保守蛋白,参与多种细胞过程,包括类固醇激素转录和配子发生。在本研究中,我们首次报道了海虱罗氏海盘虫(Caligus rogercresseyi)中抑制素-2(Phb2)基因的特征。罗氏海盘虫Phb2 cDNA全长1406 bp,包含一个894个碱基对(bp)的预测开放阅读框(ORF),编码298个氨基酸。来自其他节肢动物的抑制素蛋白的多序列比对显示出高度的氨基酸序列保守性。电子Illumina读数计数和RT-qPCR分析显示出性别依赖性差异表达,与成年雄性相比,成年雌性的mRNA水平呈现1.7倍(RT-qPCR)的增加。总共鉴定出9个单核苷酸多态性(SNP),3个位于Phb2信使的5'UTR中,6个位于ORF中,但未发现与性别相关的突变。这些结果有助于扩展目前对罗氏海盘虫中与繁殖相关基因的认识,并可能在未来旨在控制海虱对养鱼业影响的实验中有用。