Singh Hina, Du Juan, Won KyungHwa, Yang Jung-Eun, Akter Shahina, Kim Ki-Young, Yi Tae-Hoo
Department of Oriental Medicine Biotechnology, College of Life science, Kyung Hee University, 1 Seocheon, Kihung, Yongin, Gyeonggi, 446-701, Republic of Korea.
Antonie Van Leeuwenhoek. 2015 Jun;107(6):1421-8. doi: 10.1007/s10482-015-0437-z. Epub 2015 Mar 29.
A novel Gram-negative, aerobic, yellow-pigmented, non-motile and rod-shaped bacterium, designated as THG-SM1(T), was isolated from field soil collected from Suwon, South Korea. The strain was found to grow optimally at 28 °C, at pH 7.0 and in the absence of NaCl. Based on 16S rRNA gene sequence similarities, strain THG-SM1(T) belongs to the genus Flavobacterium and is most closely related to Flavobacterium terrae KACC 11731(T), followed by Flavobacterium columnare KACC 11683(T) and Flavobacterium enshiense KCTC 23775(T). The DNA G+C content of the novel isolate was determined to be 38.5 mol%. In DNA-DNA hybridization tests, the DNA relatedness between strain THG-SM1(T) and its closest phylogenetic neighbour F. terrae was below 50 %. Flexirubin-type pigments were found to be present. The major polar lipid and isoprenoid quinone were phosphatidylethanolamine and menaquinone 6 (MK-6), respectively. The main cellular fatty acids were identified as iso-C15:1G, iso-C15:0 3OH, iso-C16:0 and iso-C15:0. The DNA-DNA hybridization result and differentiating chemotaxonomic and phenotypic characteristics showed that strain THG-SM1(T) represents a novel species of the genus Flavobacterium, for which the name Flavobacterium vireti sp. nov. is proposed. The type strain is THG-SM1(T) (=KACC 18371(T) = CCTCC AB2014312(T)).
从韩国水原采集的田间土壤中分离出一株新型革兰氏阴性、需氧、产黄色色素、无运动性的杆状细菌,命名为THG-SM1(T)。该菌株在28°C、pH 7.0且无氯化钠的条件下生长最佳。基于16S rRNA基因序列相似性,菌株THG-SM1(T)属于黄杆菌属,与土黄杆菌KACC 11731(T)关系最为密切,其次是柱状黄杆菌KACC 11683(T)和恩氏黄杆菌KCTC 23775(T)。该新分离菌株的DNA G+C含量测定为38.5 mol%。在DNA-DNA杂交试验中,菌株THG-SM1(T)与其最接近的系统发育邻居土黄杆菌之间的DNA相关性低于50%。发现存在柔韧菌素型色素。主要极性脂质和类异戊二烯醌分别为磷脂酰乙醇胺和甲基萘醌6(MK-6)。主要细胞脂肪酸鉴定为异-C15:1G、异-C15:0 3OH、异-C16:0和异-C15:0。DNA-DNA杂交结果以及区分化学分类和表型特征表明,菌株THG-SM1(T)代表黄杆菌属的一个新物种,为此提出黄杆菌病毒新种(Flavobacterium vireti sp. nov.)。模式菌株为THG-SM1(T)(=KACC 18371(T)=CCTCC AB2014312(T))。