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[莱茵衣藻在自养条件下培养的代谢谱分析]

[Analysis of metabolic profile of Chlamydomonas reinhardtii cultivated under autotrophic conditions].

作者信息

Puzanskiĭ R K, Shavarda A L, Tarakhovskaia E R, Shishova M F

出版信息

Prikl Biokhim Mikrobiol. 2015 Jan-Feb;51(1):73-85. doi: 10.7868/s0555109915010134.

Abstract

This study presents a metabolite profile analysis of unicellular green alga Chlamydomonas reinhardtii grown under autotrophic conditions at late stages of culture development. Metabolites were identified by gas chromatography coupled to mass spectrometry. Approximately 400 peaks corresponding to individual compounds were distinguished, of which approximately 100 compounds (including saccharides, fatty acids, aromatic compounds, amino acids, alcohols, etc.) were identified. A local database of mass spectra of unidentified compounds was created using MassBank software. Mapping of the metabolomic data with the use of the ChlamyCyc service showed that the identified compounds are involved in various energetic, synthetic, and signaling pathways in Chlamydomonas. The mapping of metabolites by their chemical structure with the use of Cytoscape software, combined with quantitative interpretation, showed that the majority of organic matter was concentrated primarily in the carbon backbones of fatty acids and terpenes, as well as saccharides and structurally similar compounds.

摘要

本研究对在自养条件下培养后期的单细胞绿藻莱茵衣藻进行了代谢物谱分析。代谢物通过气相色谱-质谱联用进行鉴定。区分出了大约400个对应于单个化合物的峰,其中鉴定出了约100种化合物(包括糖类、脂肪酸、芳香族化合物、氨基酸、醇类等)。使用MassBank软件创建了未知化合物质谱的本地数据库。利用ChlamyCyc服务对代谢组学数据进行映射分析表明,所鉴定的化合物参与了莱茵衣藻的各种能量、合成和信号传导途径。使用Cytoscape软件根据化学结构对代谢物进行映射,并结合定量解释,结果表明大部分有机物主要集中在脂肪酸、萜类以及糖类和结构相似化合物的碳骨架中。

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