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The Interaction of Heparin Tetrasaccharides with Chemokine CCL5 Is Modulated by Sulfation Pattern and pH.
J Biol Chem. 2015 Jun 19;290(25):15421-15436. doi: 10.1074/jbc.M115.655845. Epub 2015 Apr 23.
2
The BBXB motif of RANTES is the principal site for heparin binding and controls receptor selectivity.
J Biol Chem. 2001 Apr 6;276(14):10620-6. doi: 10.1074/jbc.M010867200. Epub 2000 Dec 14.
3
Structural and functional analysis of the RANTES-glycosaminoglycans interactions.
Biochemistry. 2001 May 29;40(21):6303-18. doi: 10.1021/bi002670n.
4
Interactions of the Chemokine CCL5/RANTES with Medium-Sized Chondroitin Sulfate Ligands.
Structure. 2015 Jun 2;23(6):1066-77. doi: 10.1016/j.str.2015.03.024. Epub 2015 May 14.
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A biophysical insight into the RANTES-glycosaminoglycan interaction.
Biochim Biophys Acta. 2009 Apr;1794(4):577-82. doi: 10.1016/j.bbapap.2009.01.001.

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Applications of Surface Plasmon Resonance in Heparan Sulfate Interactome Research.
Biomedicines. 2025 Jun 14;13(6):1471. doi: 10.3390/biomedicines13061471.
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Solvent Model Benchmark for Molecular Dynamics of Glycosaminoglycans.
J Chem Inf Model. 2023 Apr 10;63(7):2147-2157. doi: 10.1021/acs.jcim.2c01472. Epub 2023 Mar 29.
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Heparin Mimetics and Their Impact on Extracellular Matrix Protein Assemblies.
Pharmaceuticals (Basel). 2023 Mar 22;16(3):471. doi: 10.3390/ph16030471.
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Heparan sulfates and heparan sulfate binding proteins in sepsis.
Front Mol Biosci. 2023 Feb 14;10:1146685. doi: 10.3389/fmolb.2023.1146685. eCollection 2023.
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Structure and Dynamics of Human Chemokine CCL16-Implications for Biological Activity.
Biomolecules. 2022 Oct 28;12(11):1588. doi: 10.3390/biom12111588.
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Polyelectrolytes for Enzyme Immobilization and the Regulation of Their Properties.
Polymers (Basel). 2022 Oct 7;14(19):4204. doi: 10.3390/polym14194204.
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Molecular dynamics simulations to understand glycosaminoglycan interactions in the free- and protein-bound states.
Curr Opin Struct Biol. 2022 Jun;74:102356. doi: 10.1016/j.sbi.2022.102356. Epub 2022 Mar 17.

本文引用的文献

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Improved Treatment of Ligands and Coupling Effects in Empirical Calculation and Rationalization of pKa Values.
J Chem Theory Comput. 2011 Jul 12;7(7):2284-95. doi: 10.1021/ct200133y. Epub 2011 Jun 9.
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MMPBSA.py: An Efficient Program for End-State Free Energy Calculations.
J Chem Theory Comput. 2012 Sep 11;8(9):3314-21. doi: 10.1021/ct300418h. Epub 2012 Aug 16.
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PROPKA3: Consistent Treatment of Internal and Surface Residues in Empirical pKa Predictions.
J Chem Theory Comput. 2011 Feb 8;7(2):525-37. doi: 10.1021/ct100578z. Epub 2011 Jan 6.
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PTRAJ and CPPTRAJ: Software for Processing and Analysis of Molecular Dynamics Trajectory Data.
J Chem Theory Comput. 2013 Jul 9;9(7):3084-95. doi: 10.1021/ct400341p. Epub 2013 Jun 25.
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Docking server for the identification of heparin binding sites on proteins.
J Chem Inf Model. 2014 Jul 28;54(7):2068-78. doi: 10.1021/ci500115j. Epub 2014 Jul 10.
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Synthetic di-sulfated iduronic acid attenuates asthmatic response by blocking T-cell recruitment to inflammatory sites.
Proc Natl Acad Sci U S A. 2014 Jun 3;111(22):8173-8. doi: 10.1073/pnas.1319870111. Epub 2014 May 16.
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Multipose binding in molecular docking.
Int J Mol Sci. 2014 Feb 14;15(2):2622-45. doi: 10.3390/ijms15022622.
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The inflammatory chemokine CCL5 and cancer progression.
Mediators Inflamm. 2014;2014:292376. doi: 10.1155/2014/292376. Epub 2014 Jan 2.
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Flexibility and explicit solvent in molecular-dynamics-based docking of protein-glycosaminoglycan systems.
J Chem Inf Model. 2014 Feb 24;54(2):582-92. doi: 10.1021/ci4006047. Epub 2014 Feb 12.

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