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KM-parkin-DB:一个专门针对PARK2(帕金蛋白)变体的子集突变视图数据库。

The KM-parkin-DB: A Sub-set MutationView Database Specialized for PARK2 (PARKIN) Variants.

作者信息

Mitsuyama Susumu, Ohtsubo Masafumi, Minoshima Shinsei, Shimizu Nobuyoshi

机构信息

Laboratory of Gene Medicine, Keio University School of Medicine.

Department of Photomedical Genomics, Basic Medical Photonics Laboratory, Medical Photonics Research Center, Hamamatsu University School of Medicine.

出版信息

Hum Mutat. 2015 Aug;36(8):E2430-40. doi: 10.1002/humu.22803. Epub 2015 Jun 3.

DOI:10.1002/humu.22803
PMID:25907632
Abstract

We previously isolated PARKIN (PARK2) as a gene responsible for a unique sort of Parkinson disease, namely Autosomal Recessive Juvenile Parkinsonism (ARJP). In this study, we surveyed all the available literature describing PARK2 gene/Parkin protein mutations found in Parkinson disease patients. Only carefully evaluated data were deposited in the graphical database MutationView (http://mutview.dmb.med.keio.ac.jp) to construct KM-parkin-DB, an independent sub-set database. Forty-four articles were selected for data curation regarding clinical information such as ethnic origins, manifested symptoms, onset age, and hereditary patterns as well as mutation details including base changes and zygosity. A total of 366 cases were collected from 39 ethnic origins and 96 pathogenic mutations were found. PARK2 gene mutations were found also in some general Parkinson disease patients. The majority (63%) of mutations in PARK2 were restricted to two particular domains (UBL and RING1) of the Parkin protein. In these domains, two major mutations, a large deletion (DelEx3) and a point mutation (p.Arg275Trp), were located.

摘要

我们之前分离出了PARKIN(PARK2)基因,它是导致一种特殊类型帕金森病(即常染色体隐性青少年帕金森综合征,ARJP)的基因。在本研究中,我们查阅了所有描述帕金森病患者中发现的PARK2基因/Parkin蛋白突变的文献。只有经过仔细评估的数据被存入图形数据库MutationView(http://mutview.dmb.med.keio.ac.jp),以构建独立的子集数据库KM-parkin-DB。我们选择了44篇文章进行数据整理,内容涉及种族起源、表现症状、发病年龄和遗传模式等临床信息,以及包括碱基变化和纯合度在内的突变细节。总共从39个种族中收集了366个病例,并发现了96个致病突变。在一些普通帕金森病患者中也发现了PARK2基因突变。PARK2基因的大多数突变(63%)局限于Parkin蛋白的两个特定结构域(UBL和RING1)。在这些结构域中,发现了两个主要突变,一个大的缺失(DelEx3)和一个点突变(p.Arg275Trp)。

相似文献

1
The KM-parkin-DB: A Sub-set MutationView Database Specialized for PARK2 (PARKIN) Variants.KM-parkin-DB:一个专门针对PARK2(帕金蛋白)变体的子集突变视图数据库。
Hum Mutat. 2015 Aug;36(8):E2430-40. doi: 10.1002/humu.22803. Epub 2015 Jun 3.
2
Impact of autosomal recessive juvenile Parkinson's disease mutations on the structure and interactions of the parkin ubiquitin-like domain.常染色体隐性遗传少年型帕金森病突变对 parkin 泛素样结构域结构和相互作用的影响。
Biochemistry. 2011 Apr 5;50(13):2603-10. doi: 10.1021/bi200065g. Epub 2011 Mar 9.
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Identification of a novel Zn2+-binding domain in the autosomal recessive juvenile Parkinson-related E3 ligase parkin.在常染色体隐性青少年帕金森病相关E3连接酶帕金蛋白中鉴定出一种新型锌离子结合结构域。
J Biol Chem. 2009 May 29;284(22):14978-86. doi: 10.1074/jbc.M808700200. Epub 2009 Apr 1.
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Detection of compound heterozygous deletions in the parkin gene of fibroblasts in patients with autosomal recessive hereditary parkinsonism (PARK2).常染色体隐性遗传性帕金森病(PARK2)患者成纤维细胞中帕金基因复合杂合缺失的检测
Neurosci Lett. 2006 May 29;400(1-2):44-7. doi: 10.1016/j.neulet.2006.02.035. Epub 2006 Mar 6.
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Impact of altered phosphorylation on loss of function of juvenile Parkinsonism-associated genetic variants of the E3 ligase parkin.改变磷酸化对 E3 连接酶 parkin 中与青少年帕金森病相关的遗传变异体丧失功能的影响。
J Biol Chem. 2018 Apr 27;293(17):6337-6348. doi: 10.1074/jbc.RA117.000605. Epub 2018 Mar 12.
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Structure of parkin reveals mechanisms for ubiquitin ligase activation.Parkin 结构揭示泛素连接酶激活的机制。
Science. 2013 Jun 21;340(6139):1451-5. doi: 10.1126/science.1237908. Epub 2013 May 9.
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[Etiology and pathogenesis of Parkinson's disease: from mitochondrial dysfunctions to familial Parkinson's disease].帕金森病的病因与发病机制:从线粒体功能障碍到家族性帕金森病
Rinsho Shinkeigaku. 2004 Apr-May;44(4-5):241-62.
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A comprehensive computational study on pathogenic mis-sense mutations spanning the RING2 and REP domains of Parkin protein.一项关于涵盖帕金森蛋白RING2和REP结构域的致病性错义突变的全面计算研究。
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Mutation analysis of the parkin gene in Russian families with autosomal recessive juvenile parkinsonism.俄罗斯常染色体隐性青少年帕金森病家族中帕金森基因的突变分析。
Mov Disord. 2003 Aug;18(8):914-9. doi: 10.1002/mds.10467.
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Mechanism of phospho-ubiquitin-induced PARKIN activation.磷酸化泛素诱导帕金森蛋白激活的机制。
Nature. 2015 Aug 20;524(7565):370-4. doi: 10.1038/nature14879. Epub 2015 Jul 10.

引用本文的文献

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Dopamine neuron dysfunction and loss in the PrknR275W mouse model of juvenile parkinsonism.青少年帕金森病PrknR275W小鼠模型中的多巴胺能神经元功能障碍与缺失
Brain. 2024 Dec 3;147(12):4017-4025. doi: 10.1093/brain/awae276.
2
Animal Models of Autosomal Recessive Parkinsonism.常染色体隐性帕金森病的动物模型
Biomedicines. 2021 Jul 13;9(7):812. doi: 10.3390/biomedicines9070812.
3
Early Dysfunction of Substantia Nigra Dopamine Neurons in the ParkinQ311X Mouse.帕金Q311X小鼠中黑质多巴胺能神经元的早期功能障碍
Biomedicines. 2021 May 5;9(5):514. doi: 10.3390/biomedicines9050514.
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Novel Compound Heterozygous Variants in a Han-Chinese Family with Early-Onset Parkinson's Disease.一个早发性帕金森病的汉族家庭中的新型复合杂合变异体
Parkinsons Dis. 2019 Dec 23;2019:9024894. doi: 10.1155/2019/9024894. eCollection 2019.
5
HSP90-incorporating chaperome networks as biosensor for disease-related pathways in patient-specific midbrain dopamine neurons.包含 HSP90 的伴侣蛋白组网络作为疾病相关通路的生物传感器,用于患者特异性中脑多巴胺神经元。
Nat Commun. 2018 Oct 19;9(1):4345. doi: 10.1038/s41467-018-06486-6.
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Neurochemical and Behavior Deficits in Rats with Iron and Rotenone Co-treatment: Role of Redox Imbalance and Neuroprotection by Biochanin A.铁与鱼藤酮联合处理大鼠的神经化学和行为缺陷:氧化还原失衡的作用及生物chanin A的神经保护作用
Front Neurosci. 2017 Nov 23;11:657. doi: 10.3389/fnins.2017.00657. eCollection 2017.