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Tilt behavior of an octa-peptide nanotube in POPE and affects on the transport characteristics of channel water.

作者信息

Yu Yi, Fan Jianfen, Yan Xiliang, Xu Jian, Zhang Mingming

机构信息

College of Chemistry, Chemical Engineering and Materials Science, Soochow University, Suzhou 215123, People's Republic of China.

出版信息

J Phys Chem A. 2015 May 21;119(20):4723-34. doi: 10.1021/acs.jpca.5b01380. Epub 2015 May 7.

Abstract

MD simulations have been carried out for studying the tilt behaviors of the 8 × (WL)4-CPNT embedded in the POPE bilayer in a water environment and under an anhydrous condition, respectively. Besides, the dependences of the transport characteristics of channel water on the extent of the CPNT tilt were explored. The results indicate that the presence of water may exacerbate the CPNT tilt but plays an important role in maintaining the integrity of the CPNT by forming water bridges in the end-gaps. Cation-π interactions between the indole rings of Trp residues and lipid headgroups are the major factor causing the CPNT tilt under an anhydrous condition, while H-bonded interactions between water molecules and the indole rings are primary in a water environment. The dipole orientations of channel water molecules except those in the last end-gap are gradually oriented and eventually only take "+dipole" states under 20° of the CPNT tilt. The average residence time of channel water gradually increases with the intensifying of the CPNT tilt.

摘要

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