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对加利福尼亚海狮(Zalophus californianus)血浆进行蛋白质组学分析,发现载脂蛋白E是慢性软骨藻酸中毒的候选生物标志物。

Proteomic Analysis of Plasma from California Sea Lions (Zalophus californianus) Reveals Apolipoprotein E as a Candidate Biomarker of Chronic Domoic Acid Toxicosis.

作者信息

Neely Benjamin A, Ferrante Jason A, Chaves J Mauro, Soper Jennifer L, Almeida Jonas S, Arthur John M, Gulland Frances M D, Janech Michael G

机构信息

Department of Medicine, Division of Nephrology, Medical University of South Carolina, Charleston, SC, United States of America.

Department of Medicine, Division of Nephrology, Medical University of South Carolina, Charleston, SC, United States of America; Grice Marine Laboratory, College of Charleston, Charleston, SC, United States of America.

出版信息

PLoS One. 2015 Apr 28;10(4):e0123295. doi: 10.1371/journal.pone.0123295. eCollection 2014.

Abstract

Domoic acid toxicosis (DAT) in California sea lions (Zalophus californianus) is caused by exposure to the marine biotoxin domoic acid and has been linked to massive stranding events and mortality. Diagnosis is based on clinical signs in addition to the presence of domoic acid in body fluids. Chronic DAT further is characterized by reoccurring seizures progressing to status epilepticus. Diagnosis of chronic DAT is often slow and problematic, and minimally invasive tests for DAT have been the focus of numerous recent biomarker studies. The goal of this study was to retrospectively profile plasma proteins in a population of sea lions with chronic DAT and those without DAT using two dimensional gel electrophoresis to discover whether individual, multiple, or combinations of protein and clinical data could be utilized to identify sea lions with DAT. Using a training set of 32 sea lion sera, 20 proteins and their isoforms were identified that were significantly different between the two groups (p<0.05). Interestingly, 11 apolipoprotein E (ApoE) charge forms were decreased in DAT samples, indicating that ApoE charge form distributions may be important in the progression of DAT. In order to develop a classifier of chronic DAT, an independent blinded test set of 20 sea lions, seven with chronic DAT, was used to validate models utilizing ApoE charge forms and eosinophil counts. The resulting support vector machine had high sensitivity (85.7% with 92.3% negative predictive value) and high specificity (92.3% with 85.7% positive predictive value). These results suggest that ApoE and eosinophil counts along with machine learning can perform as a robust and accurate tool to diagnose chronic DAT. Although this analysis is specifically focused on blood biomarkers and routine clinical data, the results demonstrate promise for future studies combining additional variables in multidimensional space to create robust classifiers.

摘要

加利福尼亚海狮(Zalophus californianus)的软骨藻酸中毒(DAT)是由于接触海洋生物毒素软骨藻酸引起的,并且与大规模搁浅事件和死亡有关。诊断除了依据体液中存在软骨藻酸外,还基于临床症状。慢性DAT的进一步特征是癫痫反复发作并发展为癫痫持续状态。慢性DAT的诊断通常缓慢且存在问题,针对DAT的微创检测一直是近期众多生物标志物研究的重点。本研究的目的是使用二维凝胶电泳对患有慢性DAT和未患DAT的海狮群体的血浆蛋白进行回顾性分析,以发现蛋白质和临床数据的个体、多个或组合是否可用于识别患有DAT的海狮。使用32份海狮血清的训练集,鉴定出两组之间有显著差异(p<0.05)的20种蛋白质及其异构体。有趣的是,DAT样本中11种载脂蛋白E(ApoE)电荷形式减少,表明ApoE电荷形式分布可能在DAT的进展中起重要作用。为了开发慢性DAT的分类器,使用20只海狮的独立盲法测试集(7只患有慢性DAT)来验证利用ApoE电荷形式和嗜酸性粒细胞计数的模型。所得的支持向量机具有高灵敏度(85.7%,阴性预测值为92.3%)和高特异性(92.3%,阳性预测值为85.7%)。这些结果表明,ApoE、嗜酸性粒细胞计数以及机器学习可作为诊断慢性DAT的强大而准确的工具。尽管该分析特别关注血液生物标志物和常规临床数据,但结果显示了未来在多维空间中结合其他变量以创建强大分类器的研究前景。

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