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仿生磷酸盐清除剂的计算设计。

Computational Design of Biomimetic Phosphate Scavengers.

机构信息

†The Biomimetic Membrane Group, Department of Environmental Engineering, Technical University of Denmark, DK 2800 Kgs. Lyngby Denmark.

‡University of Maribor, Faculty of Chemistry and Chemical Engineering, Smetanova ulica 17, SI-2000 Maribor, Slovenia.

出版信息

Environ Sci Technol. 2015 Aug 18;49(16):9469-78. doi: 10.1021/es506214c. Epub 2015 May 8.

Abstract

Phosphorus has long been the target of much research, but in recent years the focus has shifted from being limited only to reducing its detrimental environmental impact, to also looking at how it is linked to the global food security. Therefore, the interest in finding novel techniques for phosphorus recovery, as well as improving existing techniques, has increased. In this study we apply a hybrid simulation approach of molecular dynamics and quantum mechanics to investigate the binding modes of phosphate anions by a small intrinsically disordered peptide. Our results confirm that the conformational ensemble of the peptide is significantly changed, or stabilized, by the binding of phosphate anions and that binding does not take place purely as a result of a stable P-loop binding nest, but rather that multiple binding modes may be involved. Such small synthetic peptides capable of binding phosphate could be the starting point of new novel technological approaches toward phosphorus recovery, and they represent an excellent model system for investigating the nature and dynamics of functional de novo designed intrinsically disordered proteins.

摘要

磷一直是许多研究的目标,但近年来,研究的重点不仅限于减少其对环境的有害影响,还在于研究其与全球粮食安全的关系。因此,人们越来越关注寻找回收磷的新方法,以及改进现有的技术。在这项研究中,我们应用分子动力学和量子力学的混合模拟方法来研究小分子无规卷曲肽与磷酸根阴离子的结合模式。我们的研究结果证实,磷酸根阴离子的结合会显著改变或稳定肽的构象集合,并且结合不仅仅是由于稳定的 P 环结合巢,而是可能涉及多种结合模式。这种能够结合磷酸根的小分子合成肽可能是开发回收磷的新技术的起点,它们为研究功能从头设计的无规卷曲蛋白质的本质和动力学提供了一个极好的模型系统。

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