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碎米荠和齿叶碎米荠高山种群的人口统计学历史、种群结构与局部适应

Demographic History, Population Structure, and Local Adaptation in Alpine Populations of Cardamine impatiens and Cardamine resedifolia.

作者信息

Ometto Lino, Li Mingai, Bresadola Luisa, Barbaro Enrico, Neteler Markus, Varotto Claudio

机构信息

Department of Biodiversity and Molecular Ecology, Research and Innovation Centre, Fondazione Edmund Mach, Via E. Mach 1, 38010 San Michele all'Adige (TN), Italy.

出版信息

PLoS One. 2015 May 1;10(5):e0125199. doi: 10.1371/journal.pone.0125199. eCollection 2015.

Abstract

Species evolution depends on numerous and distinct forces, including demography and natural selection. For example, local adaptation and population structure affect the evolutionary history of species living along environmental clines. This is particularly relevant in plants, which are often characterized by limited dispersal ability and the need to respond to abiotic and biotic stress factors specific to the local environment. Here we study the demographic history and the possible existence of local adaptation in two related species of Brassicaceae, Cardamine impatiens and Cardamine resedifolia, which occupy separate habitats along the elevation gradient. Previous genome-wide analyses revealed the occurrence of distinct selective pressures in the two species, with genes involved in cold response evolving particularly fast in C. resedifolia. In this study we surveyed patterns of molecular evolution and genetic variability in a set of 19 genes, including neutral and candidate genes involved in cold response, across 10 populations each of C. resedifolia and C. impatiens from the Italian Alps (Trentino). We inferred the population structure and demographic history of the two species, and tested the occurrence of signatures of local adaptation in these genes. The results indicate that, despite a slightly higher population differentiation in C. resedifolia than in C. impatiens, both species are only weakly structured and that populations sampled at high altitude experience less gene flow than low-altitude ones. None of the genes showed signatures of positive selection, suggesting that they do not seem to play relevant roles in the current evolutionary processes of adaptation to alpine environments of these species.

摘要

物种进化取决于众多不同的力量,包括种群统计学和自然选择。例如,局部适应性和种群结构会影响沿环境梯度分布的物种的进化历史。这在植物中尤为重要,因为植物通常具有扩散能力有限以及需要应对特定局部环境中的非生物和生物胁迫因素的特点。在这里,我们研究了十字花科的两个相关物种——凤仙花碎米荠(Cardamine impatiens)和水田碎米荠(Cardamine resedifolia)的种群历史以及局部适应性的可能存在情况,这两个物种沿着海拔梯度占据不同的栖息地。先前的全基因组分析揭示了这两个物种中存在不同的选择压力,其中参与冷响应的基因在水田碎米荠中进化得特别快。在本研究中,我们调查了19个基因的分子进化模式和遗传变异性,这些基因包括中性基因和参与冷响应的候选基因,样本来自意大利阿尔卑斯山(特伦蒂诺)的10个凤仙花碎米荠种群和10个水田碎米荠种群。我们推断了这两个物种的种群结构和种群历史,并测试了这些基因中局部适应性特征的存在情况。结果表明,尽管水田碎米荠的种群分化略高于凤仙花碎米荠,但两个物种的结构都很松散,而且在高海拔地区采样的种群比低海拔地区的种群经历的基因流更少。没有一个基因显示出正选择的特征,这表明它们似乎在这些物种当前适应高山环境的进化过程中没有发挥相关作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/626c/4416911/774b8e7514fa/pone.0125199.g001.jpg

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