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本文引用的文献

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QUAST: quality assessment tool for genome assemblies.QUAST:基因组组装质量评估工具。
Bioinformatics. 2013 Apr 15;29(8):1072-5. doi: 10.1093/bioinformatics/btt086. Epub 2013 Feb 19.
2
Reevaluating assembly evaluations with feature response curves: GAGE and assemblathons.重新评估装配评估的特征响应曲线:GAGE 和装配竞赛。
PLoS One. 2012;7(12):e52210. doi: 10.1371/journal.pone.0052210. Epub 2012 Dec 28.
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Ray Meta: scalable de novo metagenome assembly and profiling.Ray Meta:可扩展的从头宏基因组组装与分析
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嗜冷栖热袍菌菌株ATCC BAA - 314、ATCC 70018和ATCC 70019的基因组序列

Genome Sequences of Pseudoalteromonas Strains ATCC BAA-314, ATCC 70018, and ATCC 70019.

作者信息

Givan Scott A, Zhou Ming-Yi, Bromert Karen, Bivens Nathan, Chapman Linda Fleet

机构信息

Informatics Research Core Facility, Department of Molecular Microbiology and Immunology, University of Missouri, Columbia, Missouri, USA.

DNA Core Facility, University of Missouri, Columbia, Missouri, USA.

出版信息

Genome Announc. 2015 May 7;3(3):e00390-15. doi: 10.1128/genomeA.00390-15.

DOI:10.1128/genomeA.00390-15
PMID:25953181
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4424297/
Abstract

The assembly and annotation of the draft genome sequences for Pseudoalteromonas strains ATCC BAA314, ATCC 700518, and ATCC 700519 reveal candidates for promoting symbiosis between Pseudoalteromonas strains and eukaryotes. Groups of genes generally associated with virulence are present in all three strains, suggesting that these bacteria may be pathogenic under specific circumstances.

摘要

对嗜冷栖假交替单胞菌菌株ATCC BAA314、ATCC 700518和ATCC 700519的基因组序列草图进行组装和注释,发现了促进嗜冷栖假交替单胞菌菌株与真核生物共生的候选基因。在所有这三个菌株中都存在通常与毒力相关的基因群,这表明这些细菌在特定情况下可能具有致病性。