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Embryo development. A cysteine-clamp gene drives embryo polarity in the midge Chironomus.
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The anterior determinant bicoid of Drosophila is a derived Hox class 3 gene.
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Maternal co-ordinate gene regulation and axis polarity in the scuttle fly Megaselia abdita.
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Bicoid cooperative DNA binding is critical for embryonic patterning in Drosophila.
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Stable, precise, and reproducible patterning of bicoid and hunchback molecules in the early Drosophila embryo.
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3 minutes to precisely measure morphogen concentration.
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Subcellular Enrichment Patterns of New Genes in Drosophila Evolution.
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Temporal control of RNAi reveals both robust and labile feedback loops in the segmentation clock of the red flour beetle.
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Advances in genome sequencing reveal changes in gene content that contribute to arthropod macroevolution.
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Twenty-seven ZAD-ZNF genes of Drosophila melanogaster are orthologous to the embryo polarity determining mosquito gene cucoid.
PLoS One. 2023 Jan 3;18(1):e0274716. doi: 10.1371/journal.pone.0274716. eCollection 2023.
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A timer gene network is spatially regulated by the terminal system in the embryo.
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Germline specification and axis determination in viviparous and oviparous pea aphids: conserved and divergent features.
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circlize Implements and enhances circular visualization in R.
Bioinformatics. 2014 Oct;30(19):2811-2. doi: 10.1093/bioinformatics/btu393. Epub 2014 Jun 14.
2
Sex-specific adaptation drives early sex chromosome evolution in Drosophila.
Science. 2012 Jul 20;337(6092):341-5. doi: 10.1126/science.1225385.
3
Asymmetrically expressed axin required for anterior development in Tribolium.
Proc Natl Acad Sci U S A. 2012 May 15;109(20):7782-6. doi: 10.1073/pnas.1116641109. Epub 2012 May 2.
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Fast gapped-read alignment with Bowtie 2.
Nat Methods. 2012 Mar 4;9(4):357-9. doi: 10.1038/nmeth.1923.
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FLASH: fast length adjustment of short reads to improve genome assemblies.
Bioinformatics. 2011 Nov 1;27(21):2957-63. doi: 10.1093/bioinformatics/btr507. Epub 2011 Sep 7.
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Episodic radiations in the fly tree of life.
Proc Natl Acad Sci U S A. 2011 Apr 5;108(14):5690-5. doi: 10.1073/pnas.1012675108. Epub 2011 Mar 14.
8
Maternal activation of gap genes in the hover fly Episyrphus.
Development. 2010 May;137(10):1709-19. doi: 10.1242/dev.046649.
9
BLAST+: architecture and applications.
BMC Bioinformatics. 2009 Dec 15;10:421. doi: 10.1186/1471-2105-10-421.
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De novo transcriptome assembly with ABySS.
Bioinformatics. 2009 Nov 1;25(21):2872-7. doi: 10.1093/bioinformatics/btp367. Epub 2009 Jun 15.

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