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本文引用的文献

1
A method for calculating probabilities of fitness consequences for point mutations across the human genome.一种计算人类基因组中单个点突变适应性后果概率的方法。
Nat Genet. 2015 Mar;47(3):276-83. doi: 10.1038/ng.3196. Epub 2015 Jan 19.
2
No evidence that selection has been less effective at removing deleterious mutations in Europeans than in Africans.没有证据表明,在清除有害突变方面,选择对欧洲人的效果比对非洲人的效果差。
Nat Genet. 2015 Feb;47(2):126-31. doi: 10.1038/ng.3186. Epub 2015 Jan 12.
3
Population structure at different minor allele frequency levels.不同次要等位基因频率水平下的群体结构。
BMC Proc. 2014 Jun 17;8(Suppl 1 Genetic Analysis Workshop 18Vanessa Olmo):S55. doi: 10.1186/1753-6561-8-S1-S55. eCollection 2014.
4
The distribution of deleterious genetic variation in human populations.人类群体中有害基因变异的分布。
Curr Opin Genet Dev. 2014 Dec;29:139-46. doi: 10.1016/j.gde.2014.09.005.
5
Characteristics of neutral and deleterious protein-coding variation among individuals and populations.个体和群体中中性和有害蛋白质编码变异的特征。
Am J Hum Genet. 2014 Oct 2;95(4):421-36. doi: 10.1016/j.ajhg.2014.09.006.
6
Impact of range expansions on current human genomic diversity.范围扩张对当前人类基因组多样性的影响。
Curr Opin Genet Dev. 2014 Dec;29:22-30. doi: 10.1016/j.gde.2014.07.007. Epub 2014 Aug 23.
7
Demography and the age of rare variants.人口统计学与罕见变异的时代
PLoS Genet. 2014 Aug 7;10(8):e1004528. doi: 10.1371/journal.pgen.1004528. eCollection 2014 Aug.
8
Pathogenic variants for Mendelian and complex traits in exomes of 6,517 European and African Americans: implications for the return of incidental results.6517名欧洲裔和非裔美国人外显子组中孟德尔性状和复杂性状的致病变异:对意外结果反馈的影响
Am J Hum Genet. 2014 Aug 7;95(2):183-93. doi: 10.1016/j.ajhg.2014.07.006. Epub 2014 Jul 31.
9
Distribution and medical impact of loss-of-function variants in the Finnish founder population.芬兰奠基者人群中功能丧失性变异的分布及医学影响
PLoS Genet. 2014 Jul 31;10(7):e1004494. doi: 10.1371/journal.pgen.1004494. eCollection 2014 Jul.
10
The impact of population demography and selection on the genetic architecture of complex traits.人口统计学和选择对复杂性状遗传结构的影响。
PLoS Genet. 2014 May 29;10(5):e1004379. doi: 10.1371/journal.pgen.1004379. eCollection 2014.

估算人类基因组中的突变负荷。

Estimating the mutation load in human genomes.

作者信息

Henn Brenna M, Botigué Laura R, Bustamante Carlos D, Clark Andrew G, Gravel Simon

机构信息

Department of Ecology and Evolution, Stony Brook University, 650 Life Sciences Building, Stony Brook, New York 11794-5245, USA.

Stanford University School of Medicine, Department of Genetics, 291 Campus Drive, Stanford, California 94305, USA.

出版信息

Nat Rev Genet. 2015 Jun;16(6):333-43. doi: 10.1038/nrg3931. Epub 2015 May 12.

DOI:10.1038/nrg3931
PMID:25963372
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4959039/
Abstract

Next-generation sequencing technology has facilitated the discovery of millions of genetic variants in human genomes. A sizeable fraction of these variants are predicted to be deleterious. Here, we review the pattern of deleterious alleles as ascertained in genome sequencing data sets and ask whether human populations differ in their predicted burden of deleterious alleles - a phenomenon known as mutation load. We discuss three demographic models that are predicted to affect mutation load and relate these models to the evidence (or the lack thereof) for variation in the efficacy of purifying selection in diverse human genomes. We also emphasize why accurate estimation of mutation load depends on assumptions regarding the distribution of dominance and selection coefficients - quantities that remain poorly characterized for current genomic data sets.

摘要

下一代测序技术推动了人类基因组中数以百万计基因变异的发现。预计这些变异中有相当一部分是有害的。在此,我们回顾了在基因组测序数据集中确定的有害等位基因模式,并探讨人类群体在预测的有害等位基因负担方面是否存在差异——这一现象被称为突变负荷。我们讨论了三种预计会影响突变负荷的人口统计学模型,并将这些模型与不同人类基因组中纯化选择效率差异的证据(或缺乏证据的情况)联系起来。我们还强调了为什么准确估计突变负荷取决于关于显性和选择系数分布的假设——而对于当前的基因组数据集,这些数量仍未得到很好的表征。