Shakhnovich E I, Finkelstein A V
Biopolymers. 1989 Oct;28(10):1667-80. doi: 10.1002/bip.360281003.
A theory of equilibrium denaturation of proteins is suggested. According to this theory, a cornerstone of protein denaturation is disruption of tight packing of side chains in protein core. Investigation of this disruption is the object of this paper. It is shown that this disruption is an "all-or-none" transition (independent of how compact is the denatured state of a protein and independent of the protein-solvent interactions) because expansion of a globule must exceed some threshold to release rotational isomerization of side chains. Smaller expansion cannot produce entropy compensation of nonbonded energy loss; this is the origin of a free-energy barrier (transition state) between the native and denatured states. The density of the transition state is so high that the solvent cannot penetrate into protein in this state. The results obtained in this paper make it possible to present in the following paper a general phase diagram of protein molecule in solution.
提出了一种蛋白质平衡变性理论。根据该理论,蛋白质变性的一个基石是蛋白质核心中侧链紧密堆积的破坏。对这种破坏的研究是本文的目标。结果表明,这种破坏是一种“全或无”的转变(与蛋白质变性状态的紧密程度无关,也与蛋白质-溶剂相互作用无关),因为球体的膨胀必须超过某个阈值才能释放侧链的旋转异构化。较小的膨胀不能产生非键能损失的熵补偿;这就是天然态和变性态之间自由能垒(过渡态)的起源。过渡态的密度非常高,以至于溶剂在这种状态下无法渗透到蛋白质中。本文获得的结果使得在下一篇论文中能够呈现溶液中蛋白质分子的一般相图。