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秀丽隐杆线虫中精氨酸激酶同工型的表征

Characterization of the arginine kinase isoforms in Caenorhabditis elegans.

作者信息

Fraga Dean, Aryal Manish, Hall Joseph E, Rae Evan, Snider Mark

机构信息

Program in Biochemistry and Molecular Biology, The College of Wooster, Wooster, OH 44691, United States; Department of Biology, The College of Wooster, Wooster, OH 44691, United States.

Program in Biochemistry and Molecular Biology, The College of Wooster, Wooster, OH 44691, United States.

出版信息

Comp Biochem Physiol B Biochem Mol Biol. 2015 Sep;187:85-101. doi: 10.1016/j.cbpb.2015.05.002. Epub 2015 May 14.

Abstract

Phosphagen kinases (PKs) are well-studied enzymes involved in energy homeostasis in a wide range of animal, protozoan, and even some bacterial species. Recent genome efforts have allowed comparative work on the PKs to extend beyond the biochemistry of individual proteins to the comparative cellular physiology and examining of the role of all PK family members in an organism. The sequencing of the Caenorhabditis elegans genome and availability of sophisticated genetic tools within that system affords the opportunity to conduct a detailed physiological analysis of the PKs from a well known invertebrate for comparison with the extensive work conducted on vertebrate systems. As a first step in this effort we have carried out a detailed molecular genetic and biochemical characterization of the PKs in C. elegans. Our results reveal that C. elegans has five PK genes encoding arginine kinases that range in catalytic efficiency (kcat/KM(Arg)) from (3.1±0.6)×10(4) to (9±4)×10(5) M(-1) s(-1). This range is generally within the range seen for arginine kinases from a variety of species. Our molecular genetic and phylogenetic analysis reveals that the gene family has undergone extensive intron loss and gain within the suborder Rhabditina. In addition, within C. elegans we find evidence of gene duplication and loss. The analysis described here for the C. elegans AKs represents one of the most complete biochemical and molecular genetic analysis of a PK family within a genetically tractable invertebrate system and opens up the possibility of conducting detailed physiological comparisons with vertebrate systems using the sophisticated tools available with this model invertebrate system.

摘要

磷酸原激酶(PKs)是一类经过充分研究的酶,参与了广泛的动物、原生动物甚至一些细菌物种的能量稳态调节。最近的基因组研究工作使得对PKs的比较研究不仅能够局限于单个蛋白质的生物化学层面,还能拓展到比较细胞生理学领域,并探究所有PK家族成员在生物体中的作用。秀丽隐杆线虫基因组的测序以及该系统中先进遗传工具的可用性,为从一种知名无脊椎动物中对PKs进行详细的生理分析提供了机会,以便与在脊椎动物系统上开展的大量研究进行比较。作为这项工作的第一步,我们对秀丽隐杆线虫中的PKs进行了详细的分子遗传学和生物化学特征分析。我们的结果表明,秀丽隐杆线虫有五个编码精氨酸激酶的PK基因,其催化效率(kcat/KM(Arg))范围为(3.1±0.6)×10(4)至(9±4)×10(5) M(-1) s(-1)。这个范围总体上处于多种物种的精氨酸激酶所观察到的范围内。我们的分子遗传学和系统发育分析表明,该基因家族在小杆线虫亚目内经历了广泛的内含子丢失和获得。此外,在秀丽隐杆线虫中我们还发现了基因复制和丢失的证据。这里对秀丽隐杆线虫精氨酸激酶的分析代表了在一个遗传易处理的无脊椎动物系统内对PK家族进行的最完整的生物化学和分子遗传学分析之一,并开启了利用这个模式无脊椎动物系统所具备的先进工具与脊椎动物系统进行详细生理比较的可能性。

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