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沿金属污染梯度的隐翅虫种群的全基因组遗传多样性。

Genome-wide genetic diversity of rove beetle populations along a metal pollution gradient.

机构信息

Institute of Environmental Sciences, Jagiellonian University, Gronostajowa 7, 30-387 Kraków, Poland.

Institute of Environmental Sciences, Jagiellonian University, Gronostajowa 7, 30-387 Kraków, Poland.

出版信息

Ecotoxicol Environ Saf. 2015 Sep;119:98-105. doi: 10.1016/j.ecoenv.2015.04.048. Epub 2015 May 16.

Abstract

To what extent chemical contamination affects genetic diversity of wild populations remains an open question in ecotoxicology. Here we used a genome-wide approach (615 nuclear RADseq loci containing 3017 SNPs) and a mtDNA fragment (ATP6) to analyze the effect of long-term exposure to elevated concentrations of metals (Cd, Pb, Zn) on genetic diversity in rove beetle (Staphylinus erythropterus) populations living along a pollution gradient in Poland. In total, 96 individuals collected from six sites at increasing distance from the source of pollution were analyzed. We found weak differentiation between populations suggesting extensive gene flow. The highest genetic diversity was observed in a population inhabiting the polluted site with the highest metal availability. This may suggest increased mutation rates, possibly in relation to elevated oxidative stress levels. The polluted site could also act as an ecological sink receiving numerous migrants from neighboring populations. Despite higher genetic diversity at the most polluted site, there was no correlation between the genetic diversity and metal pollution or other soil properties. We did not find a clear genomic signature of local adaptation to metal pollution. Like in some other cases of metal tolerance in soil invertebrates, high mobility may counteract possible effects of local selective forces associated with soil pollution.

摘要

在生态毒理学中,化学污染物对野生种群遗传多样性的影响程度仍然是一个悬而未决的问题。在这里,我们使用全基因组方法(包含 3017 个 SNP 的 615 个核 RADseq 基因座)和一段 mtDNA 片段(ATP6),分析了长期暴露于高浓度金属(Cd、Pb、Zn)对生活在波兰污染梯度上的隐翅虫(Staphylinus erythropterus)种群遗传多样性的影响。总共分析了来自污染梯度上六个地点的 96 个个体。我们发现种群之间的分化很弱,表明存在广泛的基因流。遗传多样性最高的种群栖息在金属可利用性最高的污染地点。这可能表明突变率增加,可能与氧化应激水平升高有关。污染地点也可能作为一个生态汇,接收来自邻近种群的大量移民。尽管在污染最严重的地点遗传多样性较高,但遗传多样性与金属污染或其他土壤特性之间没有相关性。我们没有发现对金属污染的本地适应性的明确基因组特征。与土壤无脊椎动物对某些其他类型金属耐受的情况一样,高迁移率可能会抵消与土壤污染相关的局部选择压力的可能影响。

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