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Transmission of multidrug-resistant tuberculosis in the UK: a cross-sectional molecular and epidemiological study of clustering and contact tracing.英国耐多药结核病的传播：一项关于聚类和接触者追踪的分子和流行病学的横断面研究。
Lancet Infect Dis. 2014 May;14(5):406-15. doi: 10.1016/S1473-3099(14)70022-2. Epub 2014 Mar 4.
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Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study.全基因组测序解析结核分枝杆菌暴发：一项回顾性观察研究。
Lancet Infect Dis. 2013 Feb;13(2):137-46. doi: 10.1016/S1473-3099(12)70277-3. Epub 2012 Nov 15.
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Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak.应用全基因组快速测序调查新生儿耐甲氧西林金黄色葡萄球菌爆发疫情
N Engl J Med. 2012 Jun 14;366(24):2267-75. doi: 10.1056/NEJMoa1109910.
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International spread of MDR TB from Tugela Ferry, South Africa.南非图盖拉渡口耐多药结核分枝杆菌的国际传播。
Emerg Infect Dis. 2011 Nov;17(11):2035-7. doi: 10.3201/eid1711.110291.
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Typing Mycobacterium tuberculosis using variable number tandem repeat analysis.使用可变数目串联重复序列分析对结核分枝杆菌进行分型。
Methods Mol Biol. 2009;465:371-94. doi: 10.1007/978-1-59745-207-6_25.
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Genome analysis of multi- and extensively-drug-resistant tuberculosis from KwaZulu-Natal, South Africa.南非夸祖鲁-纳塔尔省耐多药和广泛耐药结核的基因组分析。
PLoS One. 2009 Nov 5;4(11):e7778. doi: 10.1371/journal.pone.0007778.
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HIV infection and tuberculosis in South Africa: an urgent need to escalate the public health response.南非的艾滋病毒感染与结核病：迫切需要加强公共卫生应对措施。
Lancet. 2009 Sep 12;374(9693):921-33. doi: 10.1016/S0140-6736(09)60916-8. Epub 2009 Aug 24.
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Fast and accurate short read alignment with Burrows-Wheeler transform.使用Burrows-Wheeler变换进行快速准确的短读比对。
Bioinformatics. 2009 Jul 15;25(14):1754-60. doi: 10.1093/bioinformatics/btp324. Epub 2009 May 18.
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Lancet. 2006 Nov 4;368(9547):1575-80. doi: 10.1016/S0140-6736(06)69573-1.
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RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.RAxML-VI-HPC：基于最大似然法的系统发育分析，适用于数千个分类单元及混合模型。
Bioinformatics. 2006 Nov 1;22(21):2688-90. doi: 10.1093/bioinformatics/btl446. Epub 2006 Aug 23.

Fatal nosocomial MDR TB identified through routine genetic analysis and whole-genome sequencing.

作者信息

Williams O Martin, Abeel Thomas, Casali Nicola, Cohen Keira, Pym Alex S, Mungall Sarah B, Desjardins Christopher A, Banerjee Anindo, Drobniewski Francis, Earl Ashlee M, Cooke Graham S

出版信息

Emerg Infect Dis. 2015 Jun;21(6):1082-4. doi: 10.3201/eid2106.141903.

DOI:10.3201/eid2106.141903
PMID:25988581
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4451893/
Abstract
摘要