National Human Genome Research Institute, NIH, Bethesda, Maryland.
National Heart, Lung, and Blood Institute, NIH, Bethesda, Maryland.
Arthritis Rheumatol. 2015 Sep;67(9):2482-6. doi: 10.1002/art.39190.
To identify the cause of disease in an adult patient presenting with recent-onset fevers, chills, urticaria, fatigue, and profound myalgia, who was found to be negative for cryopyrin-associated periodic syndrome (CAPS) NLRP3 mutations by conventional Sanger DNA sequencing.
We performed whole-exome sequencing and targeted deep sequencing using DNA from the patient's whole blood to identify a possible NLRP3 somatic mutation. We then screened for this mutation in subcloned NLRP3 amplicons from fibroblasts, buccal cells, granulocytes, negatively selected monocytes, and T and B lymphocytes and further confirmed the somatic mutation by targeted sequencing of exon 3.
We identified a previously reported CAPS-associated mutation, p.Tyr570Cys, with a mutant allele frequency of 15% based on exome data. Targeted sequencing and subcloning of NLRP3 amplicons confirmed the presence of the somatic mutation in whole blood at a ratio similar to the exome data. The mutant allele frequency was in the range of 13.3-16.8% in monocytes and 15.2-18% in granulocytes. Notably, this mutation was either absent or present at a very low frequency in B and T lymphocytes, in buccal cells, and in the patient's cultured fibroblasts.
Our findings indicate the possibility of myeloid-restricted somatic mosaicism in the pathogenesis of CAPS, underscoring the emerging role of massively parallel sequencing in clinical diagnosis.
鉴定一位出现发热、寒战、荨麻疹、疲劳和严重肌痛等急性症状的成年患者的疾病病因,该患者经传统 Sanger DNA 测序发现无 Cryopyrin 相关周期性综合征 (CAPS) NLRP3 突变。
我们对患者的全血 DNA 进行全外显子测序和靶向深度测序,以鉴定可能的 NLRP3 体细胞突变。然后,我们在取自成纤维细胞、口腔细胞、粒细胞、负选单核细胞、T 和 B 淋巴细胞的 NLRP3 扩增子的亚克隆中筛选该突变,并通过外显子 3 的靶向测序进一步证实体细胞突变。
根据外显子组数据,我们发现了一个先前报道的与 CAPS 相关的突变,p.Tyr570Cys,其突变等位基因频率为 15%。靶向测序和 NLRP3 扩增子的亚克隆证实了体细胞突变在全血中的存在,其比例与外显子组数据相似。在单核细胞和粒细胞中,突变等位基因频率在 13.3-16.8%之间,在 15.2-18%之间。值得注意的是,该突变在 B 和 T 淋巴细胞、口腔细胞以及患者培养的成纤维细胞中要么不存在,要么存在极低频率。
我们的发现表明 CAPS 发病机制中存在髓系限制的体细胞镶嵌现象,突显了大规模平行测序在临床诊断中的新兴作用。