Akkaya Y, Balci K, Goren Y, Akyuz S, Stricker M C, Stover D D, Ritzhaupt G, Collier W B
Istanbul University, Faculty of Science, Department of Physics, Vezneciler, 34134 Istanbul, Turkey.
Istanbul University, Faculty of Science, Department of Physics, Vezneciler, 34134 Istanbul, Turkey.
Spectrochim Acta A Mol Biomol Spectrosc. 2015;149:812-21. doi: 10.1016/j.saa.2015.05.020. Epub 2015 May 12.
In this study based on vibrational spectroscopic measurements and Density Functional Theory (DFT), we aimed for a reliable interpretation of the IR and Raman spectra recorded for anserine in the solid phase and water (H2O) and heavy water (D2O) solutions. Initial DFT calculations at the B3LYP/6-31G(d) searched possible conformers of the anserine zwitterion using a systematic conformational search. The corresponding equilibrium geometrical parameters and vibrational spectral data were determined for each of the stable conformers (in water) by the geometry optimization and hessian calculations performed at the same level of theory using the polarized continuum model (PCM). The same calculations were repeated to determine the most energetically preferred dimer structure for the molecule and the associated geometry, force field and vibrational spectral data. The harmonic force constants obtained from these calculations were scaled by the Scaled Quantum Mechanical Force Field (SQM) method and then used in the calculation of the refined wavenumbers, potential energy distributions, IR and Raman intensities. These refined theoretical data, which confirm the zwitterion structure for anserine in the solid phase or aqueous solvents, revealed the remarkable effects of intermolecular hydrogen bonding on the structural properties and observed IR and Raman spectra of this molecule.
在这项基于振动光谱测量和密度泛函理论(DFT)的研究中,我们旨在对在固相以及水(H₂O)和重水(D₂O)溶液中所记录的鹅肌肽的红外光谱和拉曼光谱进行可靠的解释。在B3LYP/6 - 31G(d)水平上进行的初始DFT计算,通过系统的构象搜索寻找鹅肌肽两性离子的可能构象。对于每个稳定构象(在水中),通过使用极化连续介质模型(PCM)在相同理论水平上进行几何优化和海森矩阵计算,确定了相应的平衡几何参数和振动光谱数据。重复相同的计算以确定该分子能量上最有利的二聚体结构以及相关的几何结构、力场和振动光谱数据。通过缩放量子力学力场(SQM)方法对从这些计算中获得的谐性力常数进行缩放,然后用于计算精细波数、势能分布、红外和拉曼强度。这些精细的理论数据证实了鹅肌肽在固相或水性溶剂中的两性离子结构,揭示了分子间氢键对该分子结构性质以及所观察到的红外和拉曼光谱的显著影响。