Institute of Pathology, Centre for Integrated Oncology, University Hospital Cologne, Cologne, Germany.
Institute of Medical Informatics, Statistics and Epidemiology, University of Leipzig, Leipzig, Germany.
Gut. 2016 Aug;65(8):1296-305. doi: 10.1136/gutjnl-2014-309026. Epub 2015 Apr 28.
Microsatellite instability (MSI) is detected in approximately 15% of all colorectal cancers (CRC) and virtually in all cases with Lynch syndrome. The MSI phenotype is caused by dysfunctional mismatch repair (MMR) and leads to accumulation of DNA replication errors. Sporadic MSI CRC often harbours BRAF(V600E); however, no consistent data exist regarding targeted treatment approaches in BRAF(wt) MSI CRC.
Mutations and quantitative MSI were analysed by deep sequencing in 196 formalin fixed paraffin embedded (FFPE) specimens comprising Lynch and Lynch-like CRCs from the German Hereditary Nonpolyposis Colorectal Cancer registry. Functional relevance of recurrent ERBB2/HER2 mutations was investigated in CRC cell lines using reversible and irreversible HER-targeting inhibitors, EGFR-directed antibody cetuximab, HER2-directed antibody trastuzumab and siRNA-mediated ERBB2/HER2 knockdown.
Quantification of nucleotide loss in non-coding mononucleotide repeats distinguished microsatellite status with very high accuracy (area under curve=0.9998) and demonstrated progressive losses with deeper invasion of MMR-deficient colorectal neoplasms (p=0.008). Characterisation of BRAF(wt) MSI CRC revealed hot-spot mutations in well-known oncogenic drivers, including KRAS (38.7%), PIK3CA (36.5%), and ERBB2 (15.0%). L755S and V842I substitutions in ERBB2 were highly recurrent. Functional analyses in ERBB2-mutated MSI CRC cell lines revealed a differential response to HER-targeting compounds and superiority of irreversible pan-HER inhibitors.
We developed a high-throughput deep sequencing approach for concomitant MSI and mutational analyses in FFPE specimens. We provided novel insights into clinically relevant alterations in MSI CRC and a rationale for targeting ERBB2/HER2 mutations in Lynch and Lynch-like CRC.
微卫星不稳定性(MSI)在约 15%的所有结直肠癌(CRC)中被检测到,几乎在所有林奇综合征病例中都存在。MSI 表型是由错配修复(MMR)功能障碍引起的,导致 DNA 复制错误的积累。散发性 MSI CRC 通常存在 BRAF(V600E);然而,在 BRAF(wt)MSI CRC 中,针对靶向治疗方法尚无一致数据。
通过深度测序分析来自德国遗传性非息肉病结直肠癌登记处的 196 例福尔马林固定石蜡包埋(FFPE)标本中的突变和定量 MSI,这些标本包括林奇和林奇样 CRC。在 CRC 细胞系中,使用可逆和不可逆的 HER 靶向抑制剂、EGFR 定向抗体西妥昔单抗、HER2 定向抗体曲妥珠单抗和 siRNA 介导的 ERBB2/HER2 敲低来研究复发性 ERBB2/HER2 突变的功能相关性。
非编码单核苷酸重复序列核苷酸丢失的定量以非常高的准确性(曲线下面积=0.9998)区分微卫星状态,并随着 MMR 缺陷结直肠肿瘤的深度侵袭而出现渐进性丢失(p=0.008)。BRAF(wt)MSI CRC 的特征是包括 KRAS(38.7%)、PIK3CA(36.5%)和 ERBB2(15.0%)在内的已知致癌驱动因子的热点突变。ERBB2 中的 L755S 和 V842I 取代高度复发。在 ERBB2 突变的 MSI CRC 细胞系中的功能分析显示,对 HER 靶向化合物的反应存在差异,并且不可逆的泛 HER 抑制剂具有优势。
我们开发了一种用于 FFPE 标本中 MSI 和突变分析的高通量深度测序方法。我们为 MSI CRC 中临床相关改变提供了新的见解,并为林奇和林奇样 CRC 中靶向 ERBB2/HER2 突变提供了依据。