Liao Wanying, Long Junyu, Li Yiran, Xie Fucun, Xun Ziyu, Wang Yanyu, Yang Xu, Wang Yunchao, Zhou Kang, Sang Xinting, Zhao Haitao
Department of Liver Surgery, State Key Laboratory of Complex Severe and Rare Diseases, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China.
Radiology Department, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences, Beijing, China.
Front Cell Dev Biol. 2022 Jul 13;10:910749. doi: 10.3389/fcell.2022.910749. eCollection 2022.
N6-methyladenosine (m6A) and lncRNAs have been implicated in the development of colon cancer, including tumorigenesis, migration, and invasion. However, the specific effect of m6A regulators on lncRNAs is not clear, and m6A-related lncRNAs may be new prognostic biomarkers and may help direct treatment and medication. We identified 29 prognostic m6A-related lncRNAs and constructed a risk model using 12 lncRNAs. The model was an independent prognostic factor and could accurately predict the prognosis. A stable and robust nomogram that combined the model and pathologic stage was constructed. A total of 2,424 differentially expressed genes (DEGs) were identified based on the model. Functional analysis of the DEGs showed that they were associated with tumor progression, helping investigate the underlying biological functions and signaling pathways of the risk model. In addition, the low-risk group based on the risk model had more sensitivity to afatinib, metformin, and GW.441756, and patients with low risk would more likely respond to immunotherapy. Moreover, patients with higher risk were more sensitive to olaparib, bexarotene, and doxorubicin.
N6-甲基腺苷(m6A)和长链非编码RNA(lncRNAs)与结肠癌的发生发展有关,包括肿瘤发生、迁移和侵袭。然而,m6A调控因子对lncRNAs的具体作用尚不清楚,与m6A相关的lncRNAs可能是新的预后生物标志物,有助于指导治疗和用药。我们鉴定出29个与预后相关的m6A相关lncRNAs,并使用12个lncRNAs构建了一个风险模型。该模型是一个独立的预后因素,能够准确预测预后。构建了一个将该模型与病理分期相结合的稳定且可靠的列线图。基于该模型共鉴定出2424个差异表达基因(DEGs)。对DEGs的功能分析表明,它们与肿瘤进展相关,有助于研究风险模型潜在的生物学功能和信号通路。此外,基于风险模型的低风险组对阿法替尼、二甲双胍和GW.441756更敏感,低风险患者更可能对免疫治疗有反应。此外,高风险患者对奥拉帕尼、贝沙罗汀和阿霉素更敏感。