Sakatani Yoshihiro, Ichihashi Norikazu, Kazuta Yasuaki, Yomo Tetsuya
Department of Bioinformatics Engineering, Graduate School of Information Science and Technology, Osaka University, 1-5 Yamadaoka, Suita, Osaka, 565-0871, Japan.
1] Department of Bioinformatics Engineering, Graduate School of Information Science and Technology, Osaka University, 1-5 Yamadaoka, Suita, Osaka, 565-0871, Japan [2] Exploratory Research for Advanced Technology, Japan Science and Technology Agency. 1-5 Yamadaoka, Suita, Osaka, 565-0871, Japan.
Sci Rep. 2015 May 27;5:10404. doi: 10.1038/srep10404.
All living organisms have a genome replication system in which genomic DNA is replicated by a DNA polymerase translated from mRNA transcribed from the genome. The artificial reconstitution of this genome replication system is a great challenge in in vitro synthetic biology. In this study, we attempted to construct a transcription- and translation-coupled DNA replication (TTcDR) system using circular genomic DNA encoding phi29 DNA polymerase and a reconstituted transcription and translation system. In this system, phi29 DNA polymerase was translated from the genome and replicated the genome in a rolling-circle manner. When using a traditional translation system composition, almost no DNA replication was observed, because the tRNA and nucleoside triphosphates included in the translation system significantly inhibited DNA replication. To minimize these inhibitory effects, we optimized the composition of the TTcDR system and improved replication by approximately 100-fold. Using our system, genomic DNA was replicated up to 10 times in 12 hours at 30 °C. This system provides a step toward the in vitro construction of an artificial genome replication system, which is a prerequisite for the construction of an artificial cell.
所有生物都有一个基因组复制系统,在这个系统中,基因组DNA由从基因组转录的mRNA翻译而来的DNA聚合酶进行复制。在体外合成生物学中,人工重建这个基因组复制系统是一项巨大的挑战。在本研究中,我们尝试使用编码phi29 DNA聚合酶的环状基因组DNA和一个重建的转录和翻译系统构建一个转录与翻译偶联的DNA复制(TTcDR)系统。在这个系统中,phi29 DNA聚合酶从基因组翻译而来,并以滚环方式复制基因组。当使用传统的翻译系统组成时,几乎观察不到DNA复制,因为翻译系统中包含的tRNA和核苷三磷酸显著抑制了DNA复制。为了最小化这些抑制作用,我们优化了TTcDR系统的组成,并将复制效率提高了约100倍。使用我们的系统,基因组DNA在30°C下12小时内可复制多达10次。该系统为体外构建人工基因组复制系统迈出了一步,而人工基因组复制系统是构建人工细胞的先决条件。