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机器学习加光流法:一种检测心脏活性药物的简单且灵敏的方法。

Machine learning plus optical flow: a simple and sensitive method to detect cardioactive drugs.

作者信息

Lee Eugene K, Kurokawa Yosuke K, Tu Robin, George Steven C, Khine Michelle

机构信息

Department of Biomedical Engineering, University of California, Irvine, Irvine, CA 92697.

Department of Biomedical Engineering, Washington University in St. Louis, St. Louis, MO 63130.

出版信息

Sci Rep. 2015 Jul 3;5:11817. doi: 10.1038/srep11817.

Abstract

Current preclinical screening methods do not adequately detect cardiotoxicity. Using human induced pluripotent stem cell-derived cardiomyocytes (iPS-CMs), more physiologically relevant preclinical or patient-specific screening to detect potential cardiotoxic effects of drug candidates may be possible. However, one of the persistent challenges for developing a high-throughput drug screening platform using iPS-CMs is the need to develop a simple and reliable method to measure key electrophysiological and contractile parameters. To address this need, we have developed a platform that combines machine learning paired with brightfield optical flow as a simple and robust tool that can automate the detection of cardiomyocyte drug effects. Using three cardioactive drugs of different mechanisms, including those with primarily electrophysiological effects, we demonstrate the general applicability of this screening method to detect subtle changes in cardiomyocyte contraction. Requiring only brightfield images of cardiomyocyte contractions, we detect changes in cardiomyocyte contraction comparable to - and even superior to - fluorescence readouts. This automated method serves as a widely applicable screening tool to characterize the effects of drugs on cardiomyocyte function.

摘要

当前的临床前筛查方法无法充分检测心脏毒性。利用人诱导多能干细胞衍生的心肌细胞(iPS-CMs),可能进行更具生理相关性的临床前或患者特异性筛查,以检测候选药物的潜在心脏毒性作用。然而,使用iPS-CMs开发高通量药物筛选平台的一个长期挑战是需要开发一种简单可靠的方法来测量关键的电生理和收缩参数。为满足这一需求,我们开发了一个平台,该平台将机器学习与明场光流相结合,作为一种简单而强大的工具,可自动检测心肌细胞的药物效应。使用三种不同机制的心脏活性药物,包括主要具有电生理效应的药物,我们证明了这种筛查方法在检测心肌细胞收缩细微变化方面的普遍适用性。仅需心肌细胞收缩的明场图像,我们就能检测到与荧光读数相当甚至更优的心肌细胞收缩变化。这种自动化方法是一种广泛适用的筛查工具,可用于表征药物对心肌细胞功能的影响。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9ad3/4490343/caa4540b4401/srep11817-f1.jpg

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