从一名十二指肠癌患者肠道中分离出的芽孢杆菌菌株VT-13-104的全基因组序列
Complete Genome Sequence of Bacilli bacterium Strain VT-13-104 Isolated from the Intestine of a Patient with Duodenal Cancer.
作者信息
Tetz George, Tetz Victor
机构信息
Institute of Human Microbiology, LLC, New York, New York, USA
Institute of Human Microbiology, LLC, New York, New York, USA.
出版信息
Genome Announc. 2015 Jul 2;3(4):e00705-15. doi: 10.1128/genomeA.00705-15.
Abstract
We report the complete genome sequence of Bacilli bacterium strain VT-13-104 isolated from the intestine of a patient with duodenal cancer. The genome is composed of 3,573,421 bp, with a G+C content of 35.7%. It possesses 3,254 predicted protein-coding genes encoding multidrug resistance transporters, resistance to antibiotics, and virulence factors.
摘要
我们报告了从一名十二指肠癌患者肠道中分离出的芽孢杆菌菌株VT-13-104的全基因组序列。该基因组由3,573,421个碱基对组成，G+C含量为35.7%。它拥有3254个预测的蛋白质编码基因，这些基因编码多药耐药转运蛋白、抗生素抗性和毒力因子。
相似文献
1
Complete Genome Sequence of Bacilli bacterium Strain VT-13-104 Isolated from the Intestine of a Patient with Duodenal Cancer.
Genome Announc. 2015 Jul 2;3(4):e00705-15. doi: 10.1128/genomeA.00705-15.
2
Complete Genome Sequence of Paenibacillus sp. Strain VT 400, Isolated from the Saliva of a Child with Acute Lymphoblastic Leukemia.
Genome Announc. 2015 Aug 13;3(4):e00894-15. doi: 10.1128/genomeA.00894-15.
3
Complete Genome Sequence of a Novel Bacillus sp. VT 712 Strain Isolated from the Duodenum of a Patient with Intestinal Cancer.
Genome Announc. 2016 Aug 4;4(4):e00786-16. doi: 10.1128/genomeA.00786-16.
4
Draft Genome Sequence of a Strain of sp. nov., a New Member of Sporobiota Isolated from the Small Intestine of a Single Patient with Intestinal Cancer.
Genome Announc. 2017 Jun 1;5(22):e00489-17. doi: 10.1128/genomeA.00489-17.
5
Draft Genome Sequence of Kluyvera intestini Strain GT-16 Isolated from the Stomach of a Patient with Gastric Cancer.
Genome Announc. 2016 Dec 22;4(6):e01432-16. doi: 10.1128/genomeA.01432-16.
6
Draft Genome Sequence of VT-16-70 Isolated from the Bronchoalveolar Lavage Fluid of a Patient with Chronic Obstructive Pulmonary Disease.
Genome Announc. 2017 Mar 2;5(9):e01754-16. doi: 10.1128/genomeA.01754-16.
7
Draft Genome Sequence of Streptococcus halitosis sp. nov., Isolated from the Dorsal Surface of the Tongue of a Patient with Halitosis.
Microbiol Resour Announc. 2019 Jan 24;8(4). doi: 10.1128/MRA.01704-18. eCollection 2019 Jan.
8
Draft Genome Sequence of Acinetobacter sp. Strain VT-511 Isolated from the Stomach of a Patient with Gastric Cancer.
Genome Announc. 2015 Oct 15;3(5):e01202-15. doi: 10.1128/genomeA.01202-15.
9
Draft Genome Sequence of sp. nov. Strain VT16-26, Isolated from the Bronchoalveolar Lavage Fluid of a Patient with Cystic Fibrosis.
Genome Announc. 2018 Jan 11;6(2):e01473-17. doi: 10.1128/genomeA.01473-17.
10
Draft Genome Sequence of VT-16-64, Isolated from the Bronchiolar Alveolar Lavage Fluid of a Patient with Chronic Obstructive Pulmonary Disease.
Genome Announc. 2017 Apr 27;5(17):e00264-17. doi: 10.1128/genomeA.00264-17.
引用本文的文献
1
Evaluation of a New Culture-Based AtbFinder Test-System Employing a Novel Nutrient Medium for the Selection of Optimal Antibiotics for Critically Ill Patients with Polymicrobial Infections within 4 h.
Microorganisms. 2021 May 4;9(5):990. doi: 10.3390/microorganisms9050990.
2
Draft Genome Sequence of Streptococcus halitosis sp. nov., Isolated from the Dorsal Surface of the Tongue of a Patient with Halitosis.
Microbiol Resour Announc. 2019 Jan 24;8(4). doi: 10.1128/MRA.01704-18. eCollection 2019 Jan.
3
Draft Genome Sequence of VT-49 gen. nov., sp. nov., Isolated from the Dental Decay Plaque of a Patient with Periodontitis.
Genome Announc. 2018 Jan 25;6(4):e01541-17. doi: 10.1128/genomeA.01541-17.
4
Introducing the sporobiota and sporobiome.
Gut Pathog. 2017 Jun 30;9:38. doi: 10.1186/s13099-017-0187-8. eCollection 2017.
5
Draft Genome Sequence of a Strain of sp. nov., a New Member of Sporobiota Isolated from the Small Intestine of a Single Patient with Intestinal Cancer.
Genome Announc. 2017 Jun 1;5(22):e00489-17. doi: 10.1128/genomeA.00489-17.
6
Draft Genome Sequence of VT-16-64, Isolated from the Bronchiolar Alveolar Lavage Fluid of a Patient with Chronic Obstructive Pulmonary Disease.
Genome Announc. 2017 Apr 27;5(17):e00264-17. doi: 10.1128/genomeA.00264-17.
7
Draft Genome Sequence of VT-16-70 Isolated from the Bronchoalveolar Lavage Fluid of a Patient with Chronic Obstructive Pulmonary Disease.
Genome Announc. 2017 Mar 2;5(9):e01754-16. doi: 10.1128/genomeA.01754-16.
8
Complete Genome Sequence of a Novel Bacillus sp. VT 712 Strain Isolated from the Duodenum of a Patient with Intestinal Cancer.
Genome Announc. 2016 Aug 4;4(4):e00786-16. doi: 10.1128/genomeA.00786-16.
9
Genomic characterization and assessment of the virulence and antibiotic resistance of the novel species Paenibacillus sp. strain VT-400, a potentially pathogenic bacterium in the oral cavity of patients with hematological malignancies.
Gut Pathog. 2016 Feb 19;8:6. doi: 10.1186/s13099-016-0089-1. eCollection 2016.
本文引用的文献
1
Non-contiguous finished genome sequence and description of Oceanobacillus massiliensis sp. nov.
Stand Genomic Sci. 2013 Dec 15;9(2):370-84. doi: 10.4056/sigs.4267953. eCollection 2013 Dec 20.
2
Integrating genomics into the taxonomy and systematics of the Bacteria and Archaea.
Int J Syst Evol Microbiol. 2014 Feb;64(Pt 2):316-324. doi: 10.1099/ijs.0.054171-0.
3
Computationally identifying virulence factors based on KEGG pathways.
Mol Biosyst. 2013 Jun;9(6):1447-52. doi: 10.1039/c3mb70024k. Epub 2013 Mar 21.
4
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
5
Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison.
Stand Genomic Sci. 2010 Jan 28;2(1):117-34. doi: 10.4056/sigs.531120.
6
Oceanobacillus caeni sp. nov., isolated from a Bacillus-dominated wastewater treatment system in Korea.
Int J Syst Evol Microbiol. 2008 May;58(Pt 5):1109-13. doi: 10.1099/ijs.0.65335-0.
7
Virgibacillus koreensis sp. nov., a novel bacterium from a salt field, and transfer of Virgibacillus picturae to the genus Oceanobacillus as Oceanobacillus picturae comb. nov. with emended descriptions.
Int J Syst Evol Microbiol. 2006 Jan;56(Pt 1):251-7. doi: 10.1099/ijs.0.63734-0.
8
Oceanobacillus iheyensis gen. nov., sp. nov., a deep-sea extremely halotolerant and alkaliphilic species isolated from a depth of 1050 m on the Iheya Ridge.
FEMS Microbiol Lett. 2001 Dec 18;205(2):291-7. doi: 10.1111/j.1574-6968.2001.tb10963.x.
9
Microbial genome analyses: comparative transport capabilities in eighteen prokaryotes.
J Mol Biol. 2000 Aug 4;301(1):75-100. doi: 10.1006/jmbi.2000.3961.
10
The bacitracin biosynthesis operon of Bacillus licheniformis ATCC 10716: molecular characterization of three multi-modular peptide synthetases.
Chem Biol. 1997 Dec;4(12):927-37. doi: 10.1016/s1074-5521(97)90301-x.
Zotero 插件