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使用数字图像处理和地理信息系统工具的网络平台:巴西登革热案例研究

Web platform using digital image processing and geographic information system tools: a Brazilian case study on dengue.

作者信息

Brasil Lourdes M, Gomes Marília M F, Miosso Cristiano J, da Silva Marlete M, Amvame-Nze Georges D

机构信息

Biomedical Engineering Graduate Program, University of Brasília at Gama, Área Esp. 2 Lote 14 Setor Central, Gama, Brasília, Brazil.

出版信息

Biomed Eng Online. 2015 Jul 16;14:69. doi: 10.1186/s12938-015-0052-2.

Abstract

BACKGROUND

Dengue fever is endemic in Asia, the Americas, the East of the Mediterranean and the Western Pacific. According to the World Health Organization, it is one of the diseases of greatest impact on health, affecting millions of people each year worldwide. A fast detection of increases in populations of the transmitting vector, the Aedes aegypti mosquito, is essential to avoid dengue outbreaks. Unfortunately, in several countries, such as Brazil, the current methods for detecting populations changes and disseminating this information are too slow to allow efficient allocation of resources to fight outbreaks. To reduce the delay in providing the information regarding A. aegypti population changes, we propose, develop, and evaluate a system for counting the eggs found in special traps and to provide the collected data using a web structure with geographical location resources.

METHODS

One of the most useful tools for the detection and surveillance of arthropods is the ovitrap, a special trap built to collect the mosquito eggs. This allows for an egg counting process, which is still usually performed manually, in countries such as Brazil. We implement and evaluate a novel system for automatically counting the eggs found in the ovitraps' cardboards. The system we propose is based on digital image processing (DIP) techniques, as well as a Web based Semi-Automatic Counting System (SCSA-WEB). All data collected are geographically referenced in a geographic information system (GIS) and made available on a Web platform. The work was developed in Gama's administrative region, in Brasília/Brazil, with the aid of the Environmental Surveillance Directory (DIVAL-Gama) and Brasília's Board of Health (SSDF), in partnership with the University of Brasília (UnB). The system was built based on a field survey carried out during three months and provided by health professionals. These professionals provided 84 cardboards from 84 ovitraps, sized 15 × 5 cm. In developing the system, we conducted the following steps: i. Obtain images from the eggs on an ovitrap's cardboards, with a microscope. ii. Apply a proposed image-processing-based semi-automatic counting system. The system we developed uses the Java programming language and the Java Server Faces technology. This is a framework suite for web applications development. This approach will allow a simple migration to any Operating System platform and future applications on mobile devices. iii. Collect and store all data into a Database (DB) and then georeference them in a GIS. The Database Management System used to develop the DB is based on PostgreSQL. The GIS will assist in the visualization and spatial analysis of digital maps, allowing the location of Dengue outbreaks in the region of study. This will also facilitate the planning, analysis, and evaluation of temporal and spatial epidemiology, as required by the Brazilian Health Care Control Center. iv. Deploy the SCSA-WEB, DB and GIS on a single Web platform.

RESULTS

The statistical results obtained by DIP were satisfactory when compared with the SCSA-WEB's semi-automated eggs count. The results also indicate that the time spent in manual counting has being considerably reduced when using our fully automated DIP algorithm and semi-automated SCSA-WEB. The developed georeferencing Web platform proves to be of great support for future visualization with statistical and trace analysis of the disease.

CONCLUSIONS

The analyses suggest the efficiency of our algorithm for automatic eggs counting, in terms of expediting the work of the laboratory technician, reducing considerably its time and error counting rates. We believe that this kind of integrated platform and tools can simplify the decision making process of the Brazilian Health Care Control Center.

摘要

背景

登革热在亚洲、美洲、地中海东部和西太平洋地区呈地方性流行。根据世界卫生组织的数据,它是对健康影响最大的疾病之一,每年在全球影响数百万人。快速检测传播媒介埃及伊蚊种群的增加对于避免登革热爆发至关重要。不幸的是,在巴西等几个国家,目前检测种群变化并传播此类信息的方法过于缓慢,无法有效地分配资源来应对疫情爆发。为了减少提供有关埃及伊蚊种群变化信息的延迟,我们提出、开发并评估了一个系统,用于对特殊诱捕器中发现的卵进行计数,并使用具有地理位置资源的网络结构提供收集到的数据。

方法

用于节肢动物检测和监测的最有用工具之一是诱蚊产卵器,这是一种专门设计用于收集蚊卵的诱捕器。这使得在巴西等国家仍通常手动进行的卵计数过程成为可能。我们实施并评估了一种用于自动计数诱蚊产卵器纸板上发现的卵的新系统。我们提出的系统基于数字图像处理(DIP)技术以及基于网络的半自动计数系统(SCSA-WEB)。所有收集到的数据在地理信息系统(GIS)中进行地理参考,并在网络平台上提供。这项工作是在巴西巴西利亚的加马行政区开展的,借助了环境监测局(DIVAL-Gama)和巴西利亚卫生局(SSDF),并与巴西利亚大学(UnB)合作。该系统是基于卫生专业人员在三个月内进行的实地调查构建的。这些专业人员提供了来自84个诱蚊产卵器的84个尺寸为15×5厘米的纸板。在开发该系统时,我们进行了以下步骤:i. 使用显微镜获取诱蚊产卵器纸板上卵的图像。ii. 应用提出的基于图像处理的半自动计数系统。我们开发的系统使用Java编程语言和Java Server Faces技术。这是一个用于网络应用程序开发的框架套件。这种方法将允许轻松迁移到任何操作系统平台以及未来在移动设备上的应用。iii. 将所有数据收集并存储到数据库(DB)中,然后在GIS中对其进行地理参考。用于开发数据库的数据库管理系统基于PostgreSQL。GIS将有助于数字地图的可视化和空间分析,从而确定研究区域内登革热疫情的位置。这也将促进巴西医疗控制中心所要求的时间和空间流行病学的规划、分析和评估。iv. 在单个网络平台上部署SCSA-WEB、DB和GIS。

结果

与SCSA-WEB半自动卵计数相比,DIP获得的统计结果令人满意。结果还表明,使用我们的全自动DIP算法和半自动SCSA-WEB时,手动计数所花费的时间已大幅减少。开发的地理参考网络平台被证明对该疾病未来的可视化以及统计和溯源分析有很大帮助。

结论

分析表明我们的自动卵计数算法效率高,可加快实验室技术人员的工作速度,大幅降低其计数时间和错误率。我们相信这种综合平台和工具可以简化巴西医疗控制中心的决策过程。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/18b1/4502932/cbeb40a02ad6/12938_2015_52_Fig1_HTML.jpg

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