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二价金属激活的β-木糖苷酶RS223BX的X射线晶体结构

X-ray Crystal Structure of Divalent Metal-Activated β-xylosidase, RS223BX.

作者信息

Jordan Douglas B, Braker Jay D, Wagschal Kurt, Lee Charles C, Chan Victor J, Dubrovska Ievgeniia, Anderson Spencer, Wawrzak Zdzislaw

机构信息

USDA-ARS-National Center for Agricultural Utilization Research, 1815 N. University St, Peoria, IL, 61604, USA.

USDA-ARS-Western Regional Research Center, 800 Buchanan Street, Albany, CA, 94710, USA.

出版信息

Appl Biochem Biotechnol. 2015 Oct;177(3):637-48. doi: 10.1007/s12010-015-1767-z. Epub 2015 Jul 23.

Abstract

We report the X-ray crystal structure of a glycoside hydrolase family 43 β-xylosidase, RS223BX, which is strongly activated by the addition of divalent metal cations. The 2.69 Å structure reveals that the Ca(2+) cation is located at the back of the active-site pocket. The Ca(2+) is held in the active site by the carboxylate of D85, an "extra" acid residue in comparison to other GH43 active sites. The Ca(2+) is in close contact with a histidine imidazole, which in turn is in contact with the catalytic base (D15) thus providing a mechanism for stabilizing the carboxylate anion of the base and achieve metal activation. The active-site pocket is mirrored by an "inactive-site" pocket of unknown function that resides on the opposite side of the monomer.

摘要

我们报道了糖苷水解酶家族43的β-木糖苷酶RS223BX的X射线晶体结构,该酶在添加二价金属阳离子后会被强烈激活。2.69 Å的结构表明,Ca(2+)阳离子位于活性位点口袋的后部。与其他GH43活性位点相比,D85的羧酸盐将Ca(2+)保持在活性位点,D85是一个“额外”的酸性残基。Ca(2+)与组氨酸咪唑紧密接触,而组氨酸咪唑又与催化碱(D15)接触,从而提供了一种稳定碱的羧酸盐阴离子并实现金属激活的机制。活性位点口袋由位于单体另一侧的功能未知的“非活性位点”口袋镜像对称。

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