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具有有限种群规模和高突变率的多态自我复制种群的进化动力学

Evolutionary dynamics of a polymorphic self-replicator population with a finite population size and hyper mutation rate.

作者信息

Aita Takuyo, Yomo Tetsuya

机构信息

Exploratory Research for Advanced Technology, Japan Science and Technology Agency, Yamadaoka 1-5, Suita, Osaka, Japan.

Exploratory Research for Advanced Technology, Japan Science and Technology Agency, Yamadaoka 1-5, Suita, Osaka, Japan; Department of Bioinformatic Engineering, Graduate School of Information Science and Technology, Osaka University, Yamadaoka 1-5, Suita, Osaka, Japan; Graduate School of Frontier Biosciences, Osaka University, Yamadaoka 1-5, Suita, Osaka, Japan.

出版信息

J Theor Biol. 2015 Oct 7;382:298-308. doi: 10.1016/j.jtbi.2015.07.007. Epub 2015 Jul 21.

Abstract

Self-replicating biomolecules, subject to experimental evolution, exhibit hyper mutation rates where the genotypes of most offspring have at least a one point mutation. Thus, we formulated the evolutionary dynamics of an asexual self-replicator population with a finite population size and hyper mutation rate, based on the probability density of fitnesses (fitness distribution) for the evolving population. As a case study, we used a Kauffman's "NK fitness landscape". We deduced recurrence relations for the first three cumulants of the fitness distribution and compared them with the results of computer simulations. We found that the evolutionary dynamics is classified in terms of two modes of selection: the "radical mode" and the "gentle mode". In the radical mode, only a small number of genotypes with the highest or near highest fitness values can leave offspring. In the gentle mode, genotypes with moderate fitness values can leave offspring. We clarified how the evolutionary equilibrium and climbing rate depend on given parameters such as gradient and ruggedness of the landscape, mutation rate and population size, in terms of the two modes of selection. Roughly, the radical mode conducts the fast climbing but attains to the stationary states with low fitness, while the gentle mode conducts the slow climbing but attains to the stationary states with high fitness.

摘要

受实验进化影响的自我复制生物分子表现出高突变率,即大多数后代的基因型至少有一个点突变。因此,我们基于进化群体的适应度概率密度(适应度分布),构建了具有有限群体规模和高突变率的无性自我复制群体的进化动力学模型。作为案例研究,我们使用了考夫曼的“NK适应度景观”。我们推导了适应度分布的前三个累积量的递推关系,并将其与计算机模拟结果进行了比较。我们发现,进化动力学可根据两种选择模式进行分类:“激进模式”和“温和模式”。在激进模式下,只有少数具有最高或接近最高适应度值的基因型能够产生后代。在温和模式下,具有中等适应度值的基因型能够产生后代。我们根据这两种选择模式,阐明了进化平衡和攀升速率如何依赖于给定参数,如景观的梯度和崎岖度、突变率和群体规模。大致而言,激进模式进行快速攀升,但达到的稳态适应度较低,而温和模式进行缓慢攀升,但达到的稳态适应度较高。

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