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生孢梭菌DSM 795(T)的基因组序列,它是一种可降解氨基酸的、无毒的肉毒梭菌替代菌株,肉毒梭菌可产生神经毒素。

Genome sequence of Clostridium sporogenes DSM 795(T), an amino acid-degrading, nontoxic surrogate of neurotoxin-producing Clostridium botulinum.

作者信息

Poehlein Anja, Riegel Karin, König Sandra M, Leimbach Andreas, Daniel Rolf, Dürre Peter

机构信息

Genomic and Applied Microbiology & Göttingen Genomics Laboratory, Institute of Microbiology and Genetics, Georg-August University Göttingen, Göttingen, Germany.

Institute of Microbiology and Biotechnology, University of Ulm, 89069 Ulm, Germany.

出版信息

Stand Genomic Sci. 2015 Jul 21;10:40. doi: 10.1186/s40793-015-0016-y. eCollection 2015.

Abstract

Clostridium sporogenes DSM 795 is the type strain of the species Clostridium sporogenes, first described by Metchnikoff in 1908. It is a Gram-positive, rod-shaped, anaerobic bacterium isolated from human faeces and belongs to the proteolytic branch of clostridia. C. sporogenes attracts special interest because of its potential use in a bacterial therapy for certain cancer types. Genome sequencing and annotation revealed several gene clusters coding for proteins involved in anaerobic degradation of amino acids, such as glycine and betaine via Stickland reaction. Genome comparison showed that C. sporogenes is closely related to C. botulinum. The genome of C. sporogenes DSM 795 consists of a circular chromosome of 4.1 Mb with an overall GC content of 27.81 mol% harboring 3,744 protein-coding genes, and 80 RNAs.

摘要

生孢梭菌DSM 795是生孢梭菌属的模式菌株,由梅契尼科夫于1908年首次描述。它是一种革兰氏阳性、杆状的厌氧菌,从人类粪便中分离得到,属于梭菌属的蛋白水解分支。生孢梭菌因其在某些癌症类型的细菌疗法中的潜在用途而备受关注。基因组测序和注释揭示了几个编码参与氨基酸厌氧降解的蛋白质的基因簇,例如通过斯特克兰德反应降解甘氨酸和甜菜碱。基因组比较表明,生孢梭菌与肉毒梭菌密切相关。生孢梭菌DSM 795的基因组由一条4.1 Mb的环状染色体组成,总体GC含量为27.81 mol%,含有3744个蛋白质编码基因和80个RNA。

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