Nelson Michaeline B, Berlemont Renaud, Martiny Adam C, Martiny Jennifer B H
Department of Ecology and Evolutionary Biology, University of California, Irvine, California, USA
Department of Ecology and Evolutionary Biology, University of California, Irvine, California, USA Department of Earth Systems Science, University of California, Irvine, California, USA.
Appl Environ Microbiol. 2015 Oct;81(20):7012-22. doi: 10.1128/AEM.02222-15. Epub 2015 Jul 31.
Because microorganisms have different abilities to utilize nitrogen (N) through various assimilatory and dissimilatory pathways, microbial composition and diversity likely influence N cycling in an ecosystem. Terrestrial plant litter decomposition is often limited by N availability; however, little is known about the microorganisms involved in litter N cycling. In this study, we used metagenomics to characterize the potential N utilization of microbial communities in grassland plant litter. The frequencies of sequences associated with eight N cycling pathways differed by several orders of magnitude. Within a pathway, the distributions of these sequences among bacterial orders differed greatly. Many orders within the Actinobacteria and Proteobacteria appeared to be N cycling generalists, carrying genes from most (five or six) of the pathways. In contrast, orders from the Bacteroidetes were more specialized and carried genes for fewer (two or three) pathways. We also investigated how the abundance and composition of microbial N cycling genes differed over time and in response to two global change manipulations (drought and N addition). For many pathways, the abundance and composition of N cycling taxa differed over time, apparently reflecting precipitation patterns. In contrast to temporal variability, simulated global change had minor effects on N cycling potential. Overall, this study provides a blueprint for the genetic potential of N cycle processes in plant litter and a baseline for comparisons to other ecosystems.
由于微生物通过各种同化和异化途径利用氮(N)的能力不同,微生物组成和多样性可能会影响生态系统中的氮循环。陆地植物凋落物分解通常受氮有效性的限制;然而,对于参与凋落物氮循环的微生物知之甚少。在本研究中,我们使用宏基因组学来表征草地植物凋落物中微生物群落潜在的氮利用情况。与八种氮循环途径相关的序列频率相差几个数量级。在一条途径内,这些序列在细菌目之间的分布差异很大。放线菌和变形菌中的许多目似乎是氮循环通才,携带来自大多数(五条或六条)途径的基因。相比之下,拟杆菌目的目更为专一,携带较少(两条或三条)途径的基因。我们还研究了微生物氮循环基因的丰度和组成如何随时间变化以及对两种全球变化处理(干旱和添加氮)的响应。对于许多途径,氮循环类群的丰度和组成随时间变化,这显然反映了降水模式。与时间变异性相反,模拟的全球变化对氮循环潜力的影响较小。总体而言,本研究为植物凋落物中氮循环过程的遗传潜力提供了一个蓝图,并为与其他生态系统进行比较提供了一个基线。