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羧基血红蛋白的超快动力学:二维红外光谱实验与模拟

Ultrafast Dynamics of Carboxy-Hemoglobin: Two-Dimensional Infrared Spectroscopy Experiments and Simulations.

作者信息

Falvo Cyril, Daniault Louis, Vieille Thibault, Kemlin Vincent, Lambry Jean-Christophe, Meier Christoph, Vos Marten H, Bonvalet Adeline, Joffre Manuel

机构信息

†Institut des Sciences Moléculaires d'Orsay, Univ Paris-Sud, CNRS UMR 8214, 91405 Orsay, France.

‡Laboratoire d'Optique et Biosciences, Ecole Polytechnique, CNRS UMR 7645, INSERM U1182, 91128 Palaiseau, France.

出版信息

J Phys Chem Lett. 2015 Jun 18;6(12):2216-22. doi: 10.1021/acs.jpclett.5b00811. Epub 2015 Jun 1.

Abstract

This Letter presents a comparison between experimental and simulated 2D mid-infrared spectra of carboxy-hemoglobin in the spectral region of the carbon monoxide stretching mode. The simulations rely on a fluctuating potential energy surface that includes both the effect of heme and the protein surroundings computed from molecular dynamics simulations. A very good agreement between theory and experiment is obtained with no adjustable parameters. The simulations show that the effect of the distal histidine through the hydrogen bond is strong and is directly responsible for the slow decay of the frequency-frequency correlation function on a 10 ps time scale. This study confirms that fluctuations in carboxy-hemoglobin are more inhomogeneous than those in the more frequently studied carboxy-myoglobin. The comparison between simulations and experiments brings valuable information on the complex relation between protein structure and spectral diffusion.

摘要

本信函展示了在一氧化碳伸缩振动模式的光谱区域内,羧基血红蛋白的实验二维中红外光谱与模拟二维中红外光谱之间的比较。模拟基于一个波动的势能面,该势能面包含了血红素的影响以及从分子动力学模拟计算得出的蛋白质周围环境的影响。在没有可调参数的情况下,理论与实验取得了非常好的一致性。模拟结果表明,远端组氨酸通过氢键产生的影响很强,并且直接导致了频率 - 频率相关函数在10皮秒时间尺度上的缓慢衰减。这项研究证实,羧基血红蛋白中的波动比更常被研究的羧基肌红蛋白中的波动更加不均匀。模拟与实验之间的比较为蛋白质结构与光谱扩散之间的复杂关系带来了有价值的信息。

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