Hsu Chih-Yao, Wu Chung-Shien, Surveswaran Siddharthan, Chaw Shu-Miaw
a Biodiversity Research Center, Academia Sinica , Taipei , Taiwan .
b Genome and Systems Biology Degree program, National Taiwan University and Academia Sinica , Taipei , Taiwan , and.
Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Sep;27(5):3721-2. doi: 10.3109/19401736.2015.1079874. Epub 2015 Sep 15.
This study reports the complete plastome sequence of Gnetum ula, a gymnosperm species of Gnetaceae (Gnetophyta). The plastome is 113 249 bp long. It has a quadripartite structure containing a pair of large inverted repeat regions of 19 772 bp each, a large single-copy region of 64 914 bp, and a small single-copy region of 8791 bp. One hundred sixteen genes were predicted in the plastome, including 68 protein-coding genes, eight ribosomal RNA genes, and 40 transfer RNA genes. The gene density is 1.024 (genes/kb). Similar to other known Gnetum plastomes, the G.ula plastome has lost 20 protein-coding genes commonly present in other seed plant plastomes. Our phylogenetic analyses indicate that the four sampled Gnetum species are monophyletic and that G. ula is close to the two other lianas rather than the only small tree species, G. gnemon. Our phylogenetic trees also indicate that gnetophytes have the fastest evolutionary rates among gymnosperms.
本研究报道了买麻藤科(买麻藤纲)裸子植物物种——毛叶买麻藤的完整质体基因组序列。该质体基因组长度为113249 bp。它具有四分体结构,包含一对长度均为19772 bp的大的反向重复区域、一个64914 bp的大单拷贝区域和一个8791 bp的小单拷贝区域。在质体基因组中预测到116个基因,包括68个蛋白质编码基因、8个核糖体RNA基因和40个转运RNA基因。基因密度为1.024(基因/kb)。与其他已知的买麻藤质体基因组相似,毛叶买麻藤质体基因组已经丢失了其他种子植物质体基因组中通常存在的20个蛋白质编码基因。我们的系统发育分析表明,四个采样的买麻藤物种是单系的,并且毛叶买麻藤与其他两种藤本植物关系较近,而不是与唯一的小乔木物种——大叶买麻藤关系更近。我们的系统发育树还表明,在裸子植物中,买麻藤纲具有最快的进化速率。