Blanchard Andrew E, Lu Ting
Department of Physics, University of Illinois at Urbana-Champaign, 1110 West Green Street, Urbana, 61801, USA.
Department of Bioengineering, University of Illinois at Urbana-Champaign, 1304 West Springfield Avenue, Urbana, 61801, USA.
BMC Syst Biol. 2015 Sep 16;9:59. doi: 10.1186/s12918-015-0188-5.
Social interactions have been increasingly recognized as one of the major factors that contribute to the dynamics and function of bacterial communities. To understand their functional roles and enable the design of robust synthetic consortia, one fundamental step is to determine the relationship between the social interactions of individuals and the spatiotemporal structures of communities.
We present a systematic computational survey on this relationship for two-species communities by developing and utilizing a hybrid computational framework that combines discrete element techniques with reaction-diffusion equations. We found that deleterious interactions cause an increased variance in relative abundance, a drastic decrease in surviving lineages, and a rough expanding front. In contrast, beneficial interactions contribute to a reduced variance in relative abundance, an enhancement in lineage number, and a smooth expanding front. We also found that mutualism promotes spatial homogeneity and population robustness while competition increases spatial segregation and population fluctuations. To examine the generality of these findings, a large set of initial conditions with varying density and species abundance was tested and analyzed. In addition, a simplified mathematical model was developed to provide an analytical interpretation of the findings.
This work advances our fundamental understanding of bacterial social interactions and population structures and, simultaneously, benefits synthetic biology for facilitated engineering of artificial microbial consortia.
社会相互作用日益被认为是影响细菌群落动态和功能的主要因素之一。为了理解它们的功能作用并实现强大的合成菌群的设计,一个基本步骤是确定个体的社会相互作用与群落的时空结构之间的关系。
我们通过开发和利用一种将离散元技术与反应扩散方程相结合的混合计算框架,对两物种群落的这种关系进行了系统的计算研究。我们发现有害相互作用会导致相对丰度的方差增加、存活谱系的急剧减少以及前沿的粗糙扩展。相反,有益相互作用有助于降低相对丰度的方差、增加谱系数量并使前沿平滑扩展。我们还发现互利共生促进空间均匀性和种群稳健性,而竞争则增加空间隔离和种群波动。为了检验这些发现的普遍性,我们测试和分析了大量具有不同密度和物种丰度的初始条件。此外,还开发了一个简化的数学模型来对这些发现进行解析解释。
这项工作推进了我们对细菌社会相互作用和种群结构的基本理解,同时有利于合成生物学,便于人工微生物群落的工程设计。