Vettore Andre Luiz, Ramnarayanan Kalpana, Poore Gregory, Lim Kevin, Ong Choon Kiat, Huang Kie Kyon, Leong Hui Sun, Chong Fui Teen, Lim Tony Kiat-Hon, Lim Weng Khong, Cutcutache Ioana, Mcpherson John R, Suzuki Yuka, Zhang Shenli, Skanthakumar Thakshayeni, Wang Weining, Tan Daniel S W, Cho Byoung Chul, Teh Bin Tean, Rozen Steve, Tan Patrick, Iyer N Gopalakrishna
Cancer Stem Cell Biology Program, Duke-NUS Graduate Medical School, 8 College Road, Singapore, 169857, Singaore.
Laboratory of Cancer Molecular Biology, Department of Biological Sciences, Federal University of São Paulo, Rua Pedro de Toledo 669, São Paulo, 04039-032, Brazil.
Genome Med. 2015 Sep 23;7(1):98. doi: 10.1186/s13073-015-0219-2.
BACKGROUND: Carcinoma of the oral tongue (OTSCC) is the most common malignancy of the oral cavity, characterized by frequent recurrence and poor survival. The last three decades has witnessed a change in the OTSCC epidemiological profile, with increasing incidence in younger patients, females and never-smokers. Here, we sought to characterize the OTSCC genomic landscape and to determine factors that may delineate the genetic basis of this disease, inform prognosis and identify targets for therapeutic intervention. METHODS: Seventy-eight cases were subjected to whole-exome (n = 18) and targeted deep sequencing (n = 60). RESULTS: While the most common mutation was in TP53, the OTSCC genetic landscape differed from previously described cohorts of patients with head and neck tumors: OTSCCs demonstrated frequent mutations in DST and RNF213, while alterations in CDKN2A and NOTCH1 were significantly less frequent. Despite a lack of previously reported NOTCH1 mutations, integrated analysis showed enrichments of alterations affecting Notch signaling in OTSCC. Importantly, these Notch pathway alterations were prognostic on multivariate analyses. A high proportion of OTSCCs also presented with alterations in drug targetable and chromatin remodeling genes. Patients harboring mutations in actionable pathways were more likely to succumb from recurrent disease compared with those who did not, suggesting that the former should be considered for treatment with targeted compounds in future trials. CONCLUSIONS: Our study defines the Asian OTSCC mutational landscape, highlighting the key role of Notch signaling in oral tongue tumorigenesis. We also observed somatic mutations in multiple therapeutically relevant genes, which may represent candidate drug targets in this highly lethal tumor type.
背景:口腔舌癌(OTSCC)是口腔最常见的恶性肿瘤,其特征是频繁复发且生存率低。过去三十年见证了OTSCC流行病学特征的变化,年轻患者、女性和从不吸烟者的发病率不断上升。在此,我们试图描绘OTSCC的基因组图谱,并确定可能勾勒出该疾病遗传基础、为预后提供信息并确定治疗干预靶点的因素。 方法:对78例病例进行了全外显子测序(n = 18)和靶向深度测序(n = 60)。 结果:虽然最常见的突变发生在TP53基因,但OTSCC的遗传图谱与先前描述的头颈肿瘤患者队列不同:OTSCC在DST和RNF213基因中表现出频繁突变,而CDKN2A和NOTCH1基因的改变明显较少见。尽管此前未报道过NOTCH1基因突变,但综合分析显示OTSCC中影响Notch信号传导的改变有所富集。重要的是,这些Notch信号通路改变在多变量分析中具有预后意义。很大一部分OTSCC在可药物靶向和染色质重塑基因中也存在改变。与未携带可操作通路突变的患者相比,携带可操作通路突变的患者更易死于复发性疾病,这表明在未来试验中应考虑对前者使用靶向化合物进行治疗。 结论:我们的研究定义了亚洲OTSCC的突变图谱,突出了Notch信号传导在口腔舌癌发生中的关键作用。我们还观察到多个与治疗相关基因中的体细胞突变,这些突变可能代表这种高致死性肿瘤类型的候选药物靶点。
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