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配体结合对人α1-酸性糖蛋白结构和热稳定性的影响。

Influence of ligand binding on structure and thermostability of human α1-acid glycoprotein.

作者信息

Kopecký Vladimír, Ettrich Rüdiger, Pazderka Tomáš, Hofbauerová Kateřina, Řeha David, Baumruk Vladimír

机构信息

Institute of Physics, Faculty of Mathematics and Physics, Charles University in Prague, Ke Karlovu 5, CZ-12116, Prague 2, Czech Republic.

Center for Nanobiology and Structural Biology, Institute of Microbiology, Academy of Sciences of the Czech Republic, Zámek 136, CZ-37333, Nové Hrady, Czech Republic.

出版信息

J Mol Recognit. 2016 Feb;29(2):70-9. doi: 10.1002/jmr.2496. Epub 2015 Sep 24.

DOI:10.1002/jmr.2496
PMID:26400697
Abstract

Ligand binding of neutral progesterone, basic propranolol, and acidic warfarin to human α1-acid glycoprotein (AGP) was investigated by Raman spectroscopy. The binding itself is characterized by a uniform conformational shift in which a tryptophan residue is involved. Slight differences corresponding to different contacts of the individual ligands inside the β-barrel are described. Results are compared with in silico ligand docking into the available crystal structure of deglycosylated AGP using quantum/molecular mechanics. Calculated binding energies are -18.2, -14.5, and -11.5 kcal/mol for warfarin, propranolol, and progesterone, respectively. These calculations are consistent with Raman difference spectroscopy; nevertheless, minor discrepancies in the precise positions of the ligands point to structural differences between deglycosylated and native AGP. Thermal dynamics of AGP with/without bounded warfarin was followed by Raman spectroscopy in a temperature range of 10-95 °C and analyzed by principal component analysis. With increasing temperature, a slight decrease of α-helical content is observed that coincides with an increase in β-sheet content. Above 45 °C, also β-strands tend to unfold, and the observed decrease in β-sheet coincides with an increase of β-turns accompanied by a conformational shift of the nearby disulfide bridge from high-energy trans-gauche-trans to more relaxed gauche-gauche-trans. This major rearrangement in the vicinity of the bridge is not only characterized by unfolding of the β-sheet but also by subsequent ligand release. Hereby, ligand binding alters the protein dynamics, and the more rigid protein-ligand complex shows an improved thermal stability, a finding that contributes to the reported chaperone-like function of AGP.

摘要

通过拉曼光谱研究了中性孕酮、碱性普萘洛尔和酸性华法林与人α1-酸性糖蛋白(AGP)的配体结合情况。配体结合本身的特征是涉及色氨酸残基的一致构象变化。描述了与β桶内各个配体不同接触相对应的细微差异。将结果与使用量子/分子力学对去糖基化AGP的可用晶体结构进行的计算机模拟配体对接进行了比较。华法林、普萘洛尔和孕酮的计算结合能分别为-18.2、-14.5和-11.5千卡/摩尔。这些计算结果与拉曼差光谱一致;然而,配体精确位置的微小差异表明去糖基化AGP和天然AGP之间存在结构差异。在10-95°C的温度范围内,通过拉曼光谱跟踪了有/无结合华法林的AGP的热动力学,并通过主成分分析进行了分析。随着温度升高,观察到α-螺旋含量略有下降,这与β-折叠含量的增加相吻合。在45°C以上,β-链也趋于展开,观察到的β-折叠减少与β-转角的增加相吻合,同时附近二硫键的构象从高能反式- gauche-反式转变为更松弛的gauche- gauche-反式。桥附近的这种主要重排不仅以β-折叠的展开为特征,还以随后的配体释放为特征。因此,配体结合改变了蛋白质动力学,更刚性的蛋白质-配体复合物表现出更高的热稳定性,这一发现有助于报道的AGP的伴侣样功能。

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