Fang C, Schmitz L, Ferree P M
W. M. Keck Science Department, Claremont McKenna, Pitzer, and Scripps Colleges, Claremont, CA 91711, USA.
Biochem Cell Biol. 2015 Dec;93(6):596-603. doi: 10.1139/bcb-2015-0046. Epub 2015 Aug 31.
The heterochromatin protein 1 (HP1) gene family includes a set of paralogs in higher eukaryotes that serve fundamental roles in heterochromatin structure and maintenance, and other chromatin-related functions. At least 10 full and 16 partial HP1 genes exist among Drosophila species, with multiple gene gains, losses, and sub-functionalizations within this insect group. An important question is whether this diverse set of HP1 genes and their dynamic evolution represent the standard rule in eukaryotic groups. Here we have begun to address this question by bio-informatically identifying the HP1 family genes in representative species of the insect order Hymenoptera, which includes all ants, bees, wasps, and sawflies. Compared to Drosophila species, Hymenopterans have a much simpler set of HP1 genes, including one full and two partial HP1s. All 3 genes appear to have been present in the common ancestor of the Hymenopterans and they derive from a Drosophila HP1B-like gene. In ants, a partial HP1 gene containing only a chromoshadow domain harbors amino acid changes at highly conserved sites within the PxVxL recognition region, suggesting that this gene has undergone sub-functionalization. In the jewel wasp Nasonia vitripennis, the full HP1 and partial chromoshadow-only HP1 are expressed in both germ line and somatic tissues. However, the partial chromodomain-only HP1 is expressed exclusively in the ovary and testis, suggesting that it may have a specialized chromatin role during gametogenesis. Our findings demonstrate that the HP1 gene family is much simpler and evolutionarily less dynamic within the Hymenopterans compared to the much younger Drosophila group, a pattern that may reflect major differences in the range of chromatin-related functions present in these and perhaps other insect groups.
异染色质蛋白1(HP1)基因家族在高等真核生物中包括一组旁系同源基因,它们在异染色质结构和维持以及其他与染色质相关的功能中发挥着基本作用。果蝇物种中至少存在10个完整的和16个部分的HP1基因,在这个昆虫类群中存在多个基因的获得、丢失和亚功能化。一个重要的问题是,这一多样的HP1基因及其动态进化是否代表了真核生物类群中的标准规律。在这里,我们开始通过生物信息学方法在膜翅目昆虫的代表性物种中鉴定HP1家族基因来解决这个问题,膜翅目包括所有蚂蚁、蜜蜂、黄蜂和叶蜂。与果蝇物种相比,膜翅目昆虫的HP1基因集要简单得多,包括一个完整的和两个部分的HP1基因。所有这3个基因似乎都存在于膜翅目昆虫的共同祖先中,并且它们源自一个类似果蝇HP1B的基因。在蚂蚁中,一个仅包含染色体阴影结构域的部分HP1基因在PxVxL识别区域内的高度保守位点处存在氨基酸变化,这表明该基因已经经历了亚功能化。在宝石黄蜂丽蝇蛹集金小蜂中,完整的HP1基因和仅含部分染色体阴影结构域的HP1基因在生殖系和体细胞组织中均有表达。然而,仅含部分色域结构域的HP1基因仅在卵巢和睾丸中表达,这表明它可能在配子发生过程中具有特殊的染色质作用。我们的研究结果表明,与年轻得多的果蝇类群相比,膜翅目昆虫中的HP1基因家族要简单得多,并且在进化上动态性较低,这种模式可能反映了这些以及其他昆虫类群中与染色质相关功能范围的主要差异。